BMC Genomics
  • Kwon MJ, Jørgensen TR, Nitsche BM, Arentshorst M, Park J, Ram AF, Meyer V, 2012 Dec 13;13:701.
  • The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger.
  • Department Molecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
  • Novodvorska M, Hayer K, Pullan ST, Wilson R, Blythe MJ, Stam H, Stratford M, Archer DB, 2013 Apr 11;14(1):246. [Epub ahead of print]
  • Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing.
  • School of Biology, University of Nottingham, University Park, Nottingham NG7 2RD, UK.
  • Sibthorp C, Wu H, Cowley G, Wong PW, Palaima P, Morozov IY, Weedall GD, Caddick MX., 2013 Dec 3;14:847.
  • Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters.
  • Institute of Integrative Biology, University of Liverpool, Biosciences Building, Crown Street, Liverpool L69 7ZB, UK.
  • Krishnan K, Ren Z, Losada L, Nierman WC, Lu LJ, Askew DS., 2014 Feb 25;15:159.
  • Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus.
  • Department of Pathology & Laboratory Medicine, University of Cincinnati College of Medicine, 231 Albert Sabin Way, Cincinnati, OH 45267-0529, USA.
  • Budak SO, Zhou M, Brouwer C, Wiebenga A, Benoit I, Di Falco M, Tsang A, de Vries RP.2014 Jun 25;15:523.
  • A genomic survey of proteases in Aspergilli.
  • CBS-KNAW Fungal Biodiversity Center, Uppsalalaan 8, Utrecht 3584 CT, The Netherlands.
  • Martins I, Hartmann DO, Alves PC, Martins C, Garcia H, Leclercq CC, Ferreira R, He J, Renaut J, Becker JD, Silva Pereira C.2014 Jul 21;15:613.
  • Elucidating how the saprophytic fungus Aspergillus nidulans uses the plant polyester suberin as carbon source.
  • Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av, da República, Oeiras, Portugal.
  • O'Keeffe G, Hammel S, Owens RA, Keane TM, Fitzpatrick DA, Jones GW, Doyle S.2014 Oct 14;15(1):894.
  • RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus.
  • Department of Biology, National University of Ireland Maynooth, Maynooth, Co, Kildare, Ireland.
  • Jin Woo Bok1, Philipp Wiemann, Graeme S Garvey, Fang Yun Lim, Brian Haas, Jennifer Wortman and Nancy P Keller, 2014 Nov 22;15:1011.
  • Illumina identification of RsrA, a conserved C2H2 transcription factor coordinating the NapA mediated oxidative stress signaling pathway in Aspergillus.
  • Department of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
  • Jin Woo Bok1, Rosa Ye, Kenneth D Clevenger, David Mead, Megan Wagner, Amanda Krerowicz, Jessica C Albright, Anthony W Goering, Paul M Thomas, Neil L Kelleher, Nancy P Keller and Chengcang C Wu, 2015 Apr 29;16:343.
  • Fungal artificial chromosomes for mining of the fungal secondary metabolome.
  • Department of Medical Microbiology and Immunology and Bacteriology, University of Wisconsin at Madison, Madison, WI, USA.
  • Youzhi Miao, Dongyang Liu, Guangqi Li, Pan Li, Yangchun Xu, Qirong Shen and Ruifu Zhang, 2015 Jun 16;16:459.
  • Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose- degrading genes.
  • Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Nanjing Agricultural University, Nanjing 210095, P.R. China.
  • Tamás Emri, Vera Szarvas, Erzsébet Orosz, Károly Antal, HeeSoo Park, Kap-Hoon Han, Jae-Hyuk Yu and István Pócsi1, 2015 Jun 27;16:478.
  • Core oxidative stress response in Aspergillus nidulans
  • Department of Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, P.O. Box 63, H-4032 Debrecen, Hungary.
  • Geromy G. Moore, Brian M. Mack and Shannon B. Beltz, 2015 Jul 28;16:551. doi: 10.1186/s12864-015-1719-6.
  • Genomic sequence of the aflatoxigenic filamentous fungus Aspergillus nomius.
  • United States Department of Agriculture, Agricultural Research Service, Southern Regional Research Center, New Orleans, LA, USA.
  • Henriette Irmer, Sonia Tarazona, Christoph Sasse, Patrick Olbermann, Jürgen Loeffler, Sven Krappmann, Ana Conesa and Gerhard H. Braus, 2015 Aug 27;16:640. doi: 10.1186/s12864-015-1853-1.
  • RNAseq analysis of Aspergillus fumigatus in blood reveals a just wait and see resting stage behavior.
  • Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen, Grisebachstraβe 8, D-37077 Göttingen, Germany.
  • Juliet D. Tang, Andy Perkins, W. Paul Williams and Marilyn L. Warburton, 2015 Sep 3;16:673. doi: 10.1186/s12864-015-1874-9.
  • Using genome-wide associations to identify metabolic pathways involved in maize aflatoxin accumulation resistance.
  • DA FS Forest Products Laboratory, Durability and Wood Protection, Starkville, MS 39759, USA.
  • Alves PC, Hartmann DO, Núñez O, Martins I, Gomes TL, Garcia H, Galceran MT, Hampson R, Becker JD, Silva Pereira C. 2016 Apr 12;17:284.
  • Transcriptomic and metabolomic profiling of ionic liquid stimuli unveils enhanced secondary metabolism in Aspergillus nidulans.
  • Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157, Oeiras, Portugal.
  • Hagiwara D, Takahashi H, Kusuya Y, Kawamoto S, Kamei K, Gonoi T. 2016 May 17;17:358.
  • Comparative transcriptome analysis revealing dormant conidia and germination associated genes in Aspergillus species: an essential role for AtfA in conidial dormancy.
  • Medical Mycology Research Center (MMRC), Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba, 260-8673, Japan.
  • Ge Y, Wang Y, Liu Y, Tan Y, Ren X, Zhang X, Hyde KD, Liu Y, Liu Z. 2016 Jun 7;17:428.
  • Comparative genomic and transcriptomic analyses of the Fuzhuan brick tea-fermentation fungus Aspergillus cristatus.
  • College of Agriculture, Guizhou University, Guiyang, Guizhou, 550025, China.
  • Hüttel W, Youssar L, Grüning BA, Günther S, Hugentobler KG. 2016 Aug 8;17:570.
  • Echinocandin B biosynthesis: a biosynthetic cluster from Aspergillus nidulans NRRL 8112 and reassembly of the subclusters Ecd and Hty from Aspergillus pachycristatus NRRL 11440 reveals a single coherent gene cluster.
  • Pharmaceutical Chemistry, Institute of Pharmaceutical Sciences, University of Freiburg, Albertstr. 25, 79104, Freiburg, Germany.
  • Han X, Chakrabortti A, Zhu J, Liang ZX, Li J. 2016 Aug 15;17:633.
  • Sequencing and functional annotation of the whole genome of the filamentous fungus Aspergillus westerdijkiae.
  • State Key Laboratory of Organ Failure Research, Division of Nephrology, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong Province, People's Republic of China.
  • Özkan S, Mohorianu I, Xu P, Dalmay T, Coutts RHA 2017 May 30;18(1):416. doi: 10.1186/s12864-017-3773-8.
  • Profile and functional analysis of small RNAs derived from Aspergillus fumigatus infected with double-stranded RNA mycoviruses.
  • Department of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, UK.
  • Borin GP, Sanchez CC, de Santana ES, Zanini GK, Dos Santos RAC, de Oliveira Pontes A, de Souza AT, Dal'Mas RMMTS, Riaño-Pachón DM, Goldman GH, Oliveira JVC 2017 Jun 30;18(1):501. doi: 10.1186/s12864-017-3857-5.
  • Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei.
  • Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Av Giuseppe Maximo Scolfaro 10000, Campinas, São Paulo, Caixa Postal 6170, 13083-970, Brazil.
  • Hu X, Qin L, Roberts DP, Lakshman DK, Gong Y, Maul JE, Xie L, Yu C, Li Y, Hu L, Liao X, Liao X 2017 Aug 31;18(1):674. doi: 10.1186/s12864-017-4016-8.
  • Characterization of mechanisms underlying degradation of sclerotia of Sclerotinia sclerotiorum by Aspergillus aculeatus Asp-4 using a combined qRT-PCR and proteomic approach.
  • Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, 430062, People's Republic of China.
BMC Genomics