東京大学大学院
総合文化研究科 広域科学専攻 生命環境科学系
理学系研究科　生物科学専攻　兼任
渡邊雄一郎 栗原志夫　研究室

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東京大学大学院総合文化研究科赴任後

1. Takei, T., Tsukada, M., Tamura,K., Hara-Nishimura, I., Fukao,Y., Kurihara,Y., Matsui, M., Saze, H., Tsuzuki, M., Watanabe, Y., Hamada, T. ARGONAUTE1-binding Tudor domain proteins function in small interfering RNA production for RNA-directed DNA methylation.　Plant Physiol. kiae135. (2024). doi.org/10.1093/plphys/kiae135
2. Futagami, K., Tsuzuki.M., Watanabe, Y. MpmiR319 promotes gemma/gemma cup formation in the Liverwort Marchantia polymorpha. bioRxiv. (2023). 2023.2009.2029.560093. doi.org/10.1101/2023.09.29.560093
3. Pietrykowska, H., Alisha, A., Aggarwal, B., Watanabe,Y., Ohtani, M., Jarmolowski,A., Sierocka, I., Szweykowska-Kulinska,Z. (2023) Conserved and non-conserved RNA–target modules in plants: Lessons for a better understanding Marchantia development. Plant Mol. Biol. 113, 121-142 （2023）.　 doi.org/10.1007/s11103-023-01392-y
4. Bowman, J.L., Berger,F., Briginshaw, L.N., Davies, K.M., Dierschke, T., Dolan,L., Fisher, T.J., Flores-Sandoval,E., Futagami,K., Ishizaki, K., Kato, H., Kohchi, T., Levins, J., Lin, S-S., Nishihama, R., Romani, R., Tanizawa, Y., Tsuzuki, M., Watanabe,Y., Yamato, K.T. and Zachgo, S. The Renaissance and Enlightenment of Marchantia as a model system. Plant Cell 34, 3512-3542 (2022). doi.org/10.1093/plcell/koac219
5. Hori, M., Shozugawa, K., Sugimori, K., Watanabe, Y. A survey of monitoring tap water hardness in Japan and its distribution patterns. Scientific Reports 11, 13546 (2021). doi.org/10.1038/s41598-021-92949-8
6. Chiam, C.N., Fujimura, T., Sano, R., Akiyoshi, N., Hiroyama, R., Watanabe, Y., Motose, H., Demura, T. and Ohtani,M. Nonsense-mediated mRNA Decay Deficiency Affects the Auxin Response and Shoot Regeneration in Arabidopsis.　Plant Cell & Physiol. 60, 2000-2014 (2019). doi.org/10.1093/pcp/pcz154
7. Tsuzuki, M., Futagami, K., Shimamura, M., Inoue, C., Kunimoto, K.,Oogami, T., Tomita, Y., Inoue, K., Kohchi, T., Yamaoka, S., Araki, T., Hamada, T. and Watanabe, Y. An early arising role of the microRNA156/529-SPL module in reproductive development revealed by the liverwort Marchantia polymorpha. Curr. Biol. 29, 3307-3314 (2019). doi.org/10.1016/j.cub.2019.07.084
8. Yoshida,T, Watanabe, Y. and Ishirua, S. Production of the herb Ruta chalepensis L. expressing amyloid beta-GFP fusion protein. Proc. Jpn. Acad., Ser. B 95, 295-302 (2019). doi.org/10.2183/pjab.95.021
9. Ishirua, S., Takagane, K., Watanabe, Y. and Yoshida,T. New vaccine therapy for Alzheimer’s disease. Glycative Stress Research 6, 1-6 (2019). doi.org/10.24659/gsr.6.1_1
10. Sakaguchi, J., Matsushita, T. and Watanabe, Y. The DWARF4 accumulation in root tips is enhanced via blue light perception by cryptochromes. Plant Cell Environ. 42, 1615-1629 (2019). doi.org/10.1111/pce.13510
11. Hamada, T., Yako, M., Minegishi, M., Sato, M., Kamei,Y., Yanagawa, Y., Toyooka, K., Watanabe, Y. and Hara-Nishimura, I., Stress granule formation is induced by a threshold temperature rather than a temperature difference in Arabidopsis. J. Cell. Sci. 131, jcs.216051 (2018). doi.org/10.1242/jcs.216051
12. Matsui, H., Nomura, Y., Egusa, M., Hamada, T., Hyon, G-S., Kaminaka, H., Watanabe, Y., Ueda, T., Trujillo, M., Shirasu, K. and Nakagami, H. The GYF domain protein PSIG1 dampens the induction of cell death during plant-pathogen interactions. PLoS Genetics (2017). doi.org/10.1371/journal.pgen.1007037
13. Bowman, J.L., Kohchi, T., Yamato, K.T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka, S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S.S., Althoff, F., Araki, T., Arteaga-Vazquez, M.A., Balasubrmanian, S., Barry, K., Bauer, D., Boehm, C.R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, E., Chiyoda, S., Chovatia, M., Davies, K.M., Delmans, M., Demura, T., Dierschke, T., Dolan, L., Dorantes-Acosta, A.E., Eklund, D.M., Florent, S.N., Flores-Sandoval, E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J., Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A.J., Higo, A., Hirakawa, Y., Hundley, H.N., Ikeda, Y., Inoue, K., Inoue, S., Ishida, S., Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M., Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S., Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S-S., Lindquist, E., Lipzen, A.M., Lu, C-W., Luna, E.D., Martienssen, R.A., Minamino, N., Mizutani, M., Mizutani, M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto, S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak, B., Reinders, A., Rövekamp,M., Sano, R., Sawa, W., Schmid, M.W., Shirakawa, M., Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki, Y., Takenaka, M., Takezawa, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M., Ward, J.M., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I., Zachgo, S. and Schmutz. J. Insights into land plant evolution garnered from the Marchantia polymorpha genome. Cell 171, 287-304. e15 (2017). doi.org/10.1016/j.cell.2017.09.030
14. Sakaguchi, J and Watanabe, Y. Light perception in aerial tissues activates DWF4 expression in root tips and induces root growth. Scientific Reports 7, 1808 (2017). doi.org/10.1038/s41598-017-01872-4
15. Tsuzuki, M. and Watanabe, Y. Profiling New Small RNA Sequences. In: Plant Epigenetics: Methods and Protocols (ed. Igor Kovalchuk, 2nd edition) pp.177-188. Springer (2016).
16. Kumakura, N., Otsuki, H., Ito, M., Nomoto, M., Tada, Y., Ohta, K. and Watanabe Y. Arabidopsis AtRRP44 has ribonuclease activity that is required for cell viability. Plant Biotechnology 33, 77-85 (2016). doi.org/10.5511/plantbiotechnology.16.0316a
17. Bowman, J., Araki, T., Arteaga-Vazquez, M., Berger, F., Dolan, L., Haseloff, J., Ishizaki, K., Kyozuka, J., Lin, S-S., Nagasaki, H., Nakagami, H., Nakajima, K., Nakamura, Y., Ohashi-Ito, K., Sawa, S., Shimamura., M., Solano, R., Tsukaya, H., Ueda, T., Watanabe, Y., Yamato, K., Zachgo, S. and Kohchi, T. The naming of names: guidelines for gene nomenclature in Marchantia. Plant Cell Physiol. 57, 257-261 (2016). doi.org/10.1093/pcp/pcv193
18. Tsuzuki, M., Nishihama, R., Ishizaki, K., Kurihara, Y., Matsui, M., Bowman, J.L., Kohchi, T., Hamada, T. and Watanabe, Y. Profiling and characterization of small RNAs in the liverwort, Marchantia polymorpha, belonging to the first diverged land plants.　Plant Cell Physiol. 57, 359–372 (2016). doi.org/10.1093/pcp/pcv182
19. Motomura, K., Le, Q.T-N., Hamada, T., Kutsuna, N., Mano, S., Nishimura, M. and Watanabe, Y. Diffuse DCP2 Accumulates in DCP1 Granules under Heat Stress in Arabidopsis thaliana. Plant Cell Physiol. 56, 107-115 (2015). doi.org/10.1093/pcp/pcu151
20. Kishi-Kaboshi, M., Muto, H., Takeda, A., Murata, T., Hasebe, M. and Watanabe, Y. Identification of tobacco germin-like protein 1 in leaf intercellular space. Plant Physiol Biochem. 85, 1-8 (2014). doi.org/10.1016/j.plaphy.2014.10.005
21. Tsuzuki, M., Takeda, A. and Watanabe, Y. Recovery of dicer-like 1-late flowering phenotype by miR172 expressed by the non-canonical DCL4-dependent biogenesis pathway. RNA 20, 1320-1327 (2014). doi.org/10.1261/rna.044966.114
22. Kumakura, N., Otsuki, H., Takeda, A. and Watanabe, Y. Arabidopsis AtRRP44A is the functional homolog of Rrp44/Dis3, an exosome component, is essential for viability and is required for RNA processing and degradation. PLoS One 8, e79219 (2013). doi.org/10.1371/journal.pone.0079219
23. Iwasaki, M., Takahashi, H., Iwakawa, H., Nakagawa, A., Ishikawa, T., Tanaka, H., Matsumura, Y., Pekker, I., Eshed, Y., Vial-Pradel, S., Ito, T., Watanabe, Y., Ueno, Y., Fukazawa, H., Kojima, S., Machida, Y. and Machida, C. Dual regulation of AUXIN-RESPONSE-FACTOR3 gene expression by AS1-AS2, which maintains the status of DNA methylation, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis. Development 140, 1958-1969 (2013). doi.org/10.1242/dev.085365
24. Hayashi, M., Nanba, C., Saito, M., Kondo, M., Takeda, A., Watanabe, Y. and Nishimura, M. Loss of XRN4 function can trigger cosuppression in a sequence-dependent manner. Plant Cell Physiol. 53, 1310-1321 (2012). doi.org/10.1093/pcp/pcs078
25. Motomura, K., Le, Q.TN., Kamakura, N., Fukaya, T., Takeda, A. and Watanabe, Y. Decapping proteins are involved in the accumulation of miRNA in Arabidopsis thaliana. RNA Biology 9, 644-652 (2012).　　doi.org/10.4161/rna.19877
26. Hamada, T., Tominaga, M., Fukaya,T., Nakamura,M., Nakano, A., Watanabe, Y. Hashimoto, T. and Baskin, T.I. (2012). RNA processing bodies, peroxisomes, Golgi bodies, mitochondria, and Endoplasmic Reticulum tubule junctions frequently pause at cortical microtubules. Plant Cell Physiol. 53, 699-708. doi.org/10.1093/pcp/pcs025
27. Sakaguchi, J. and Watanabe, Y. miR165/166 and the development of land plants. Develop. Growth Differ. 54, 93-99 (2012). doi.org/10.1111/j.1440-169X.2011.01318.x
28. Watanabe, Y. Overview of Plant RNAi. pp.1-11. In RNAi and Plant Gene Function Analysis – Methods and Protocols (Kodama, H. and Komamine, A. eds.) Humana Press (2011).
29. Motose, H., Hamada, T., Yoshimoto, K., Murata, T., Hasebe, M., Watanabe, Y., Hashimoto, T., Sakai, T. and Takahashi, T. NIMA-related kinases 6, 4, and 5 interact with each other to regulate microtubule organization during epidermal cell expansion in Arabidopsis thaliana. Plant J. 67, 993-1005 (2011). doi.org/10.1111/j.1365-313X.2011.04652.x
30. Yoshida, T., Kimura, E., Koike, S., Nojima, J., Futai, E., Sasagawa, N., Watanabe, Y. and Ishiura, S. Transgenic rice expressing amyloid β-peptide for oral immunization. International Journal of Biological Sciences 7, 301–307 (2011). doi.org/10.7150/ijbs.7.301
31. Oya, M., Suzuki, H., Watanabe, Y., Sato, M. and Tsuboi, T. Amino acids taste receptor regulates insulin secretion in pancreatic β-cell line MIN6 cells. Genes to Cells 16, 608-616 (2011). doi.org/10.1111/j.1365-2443.2011.01509.x
32. Nojima, J., Ishii-Katsuno, R., Futai, E., Sasagawa, N., Watanabe, Y., Yoshida, T. and Ishiura, S. Production of anti-amyloid β antibodies in mice fed rice expressing amyloid β. Biosci. Biotech. Biochem. 75, 396-400 (2011). doi.org/10.1271/bbb.100861
33. Nojima, J., Maeda, A., Aoki, S., Suo, S., Yanagihara, D., Watanabe, Y.,Yoshida, T. and Ishiura, S. Effect of rice-expressed amyloid β in the Tg2576 Alzhimer’s disease transgenic mouse model. Vaccine 29, 6252-6258 (2011). doi.org/10.1016/j.vaccine.2011.06.073
34. Ishii-Katsuno, R., Nakajima, A., Katsuno, T., Nojima, J., Futai, E., Sasagawa, N., Yoshida, T., Watanabe, Y. and Ishiura, S. Reduction of amyloid β-peptide accumulation in Tg2576 transgenic mice by oral vaccination. Biochem. Biophys. Res. Comm. 399, 593-599 (2010). doi.org/10.1016/j.bbrc.2010.07.120
35. Sato, M., Tsuda, K., Wang, L., Coller, J., Watanabe, Y., Glazebrook, J. and Katagiri, F. Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling. PLoS Pathogen 6, e1001011 (2010). doi.org/10.1371/journal.ppat.1001011
36. Aoki, K., Yano, K., Suzuki, A., Kawamura, S., Sakurai, N., Suda, K., Kurabayashi, A., Suzuki, T., Tsugane, T., Watanabe, M., Ooga, K., Torii, M., Takahashi, H., Watanabe, Y., Kodama, M., Ichinose, Y., Kikuchi, M., Fukushima, S., Okabe, A., Arie, T., Sato, Y., Yazawa, K., Satoh, S., Ezura, H. and Shibata, D. Large-scale analysis of full-length cDNA of tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for Solanaceae genomics. BMC Genomics 11, 210 (2010). doi.org/10.1186/1471-2164-11-210
37. Kobayashi, M., Onodera, K., Watanabe, Y. and Yamashita, I. Fabrication of 3-nm platinum wires using a tobacco mosaic virus template. Chemistry Letters 39, 616-618 (2010). doi.org/10.1246/cl.2010.616
38. Kobayashi, M., Seki, M., Tabata, H., Watanabe, Y. and Yamashita, I. Fabrication of aligned magnetic nanoparticles using tobamoviruses. Nano Letters 10, 773–776 (2010). doi.org/10.1021/nl902405s
39. Tagami, Y. and Watanabe, Y. Cloning new small RNA sequences. pp.123-138. In Plant Epigenetics book / Methods in Molecular Biology series (Kovalchuk, I. and Zemp, F.J. eds.) Human Press (2010).
40. Kurihara, Y. and Watanabe, Y. Processing of miRNA precursors. pp. 231-242. In Plant microRNA protocol book / Methods in Molecular Biology series (Green, P. and Blake eds.) Human Press (2009).
41. Kumakura, N., Takeda, A., Fujioka, Y., Motose, H., Takano, R. and Watanabe, Y. SGS3 and RDR6 interact and colocalize in cytoplasmic SGS3/RDR6-bodies. FEBS Lett. 583, 1261-1266 (2009). doi.org/10.1016/j.febslet.2009.03.055
42. Sasagawa, N., Ohno, E., Kino, Y., Watanabe, Y. and Ishiura, S. Identification of Caenorhabditis elegans K02H8.1 (CeMBL) as the functional ortholog of the mammalian MBNL proteins. J. Neuroscience Res. 87, 1090-1097 (2009). doi.org/10.1002/jnr.21942
43. Tagami, Y., Motose, H. and Watanabe, Y. A dominant mutation in DCL1 suppresses the hyl1 mutant phenotype by promoting the processing of miRNA. RNA 15, 450-458 (2009). doi.org/10.1261/rna.1297109
44. Sasaki, N., Ogata, T., Deguchi, M., Nagai, S., Tamai, A., Meshi, T., Kawakami, S., Watanabe, Y., Matsushita, Y. and Nyunoya, H. Overexpression of putative transcriptional coactivator KELP interferes with Tomato mosaic virus cell-to-cell movement. Mol. Plant Pathol. 10, 161-173 (2009). doi.org/10.1111/J.1364-3703.2008.00517.X
45. Meyers, B.C., Axtell, M. J., Bartel, B., Bartel, D.P., Baulcombe, D., Bowman, J.L., Cao, X., Carrington, J.C., Chen, X., Green, P.J., Griffiths-Jones, S., Jacobsen, S.E., Mallory, A.C., Martienssen, R.A., Poethig, R.S., Qi, Y., Vaucheret, H., Vazquez, F., Voinnet, O., Watanabe, Y., Weigel , D. and Zhu, J.K. Criteria For Annotation of Plant microRNAs. Plant Cell 20, 3186-3190 (2008). doi.org/10.1105/tpc.108.064311
46. Hori, K. and Watanabe, Y. In vivo analysis of plant NMD. In RNA Turnover, part B/ Methods in Enzymology. (Maquat, L. E. and Kiledjian, M. eds.) 449, 166-177. Academic Press (2008).
47. Takeda, A., Iwasaki, S., Watanabe, T., Utsumi, M. and Watanabe, Y. The mechanism selecting the guide strand from small RNA duplexes is different among Argonaute proteins. Plant Cell Physiol. 49, 493-500 (2008). doi.org/10.1093/pcp/pcn043
48. Motose, H., Tominaga, R., Wada, T., Sugiyama, M. and Watanabe, Y. A NIMA-related protein kinase IBO1 modulates epidermal cell shape through the organization of cortical cytoskeleton in Arabidopsis. Plant J. 54, 829-844 (2008). doi.org/10.1111/j.1365-313X.2008.03445.x
49. Tagami, Y., Inaba, N., Kutsuna, N., Kurihara,Y. and Watanabe, Y. Specific enrichment of miRNAs in Arabidopsis thaliana infected with Tobacco mosaic virus. DNA Research 14, 227-233 (2007). doi.org/10.1093/dnares/dsm022
50. Fujioka, Y., Utsumi, M., Ohba, Y. and Watanabe, Y. Location of possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis. Plant Cell Physiol. 48, 1243-1253 (2007). doi.org/10.1093/pcp/pcm099
51. Nakagawa, T., Suzuki, T., Murata, S., Nakamura, S., Hino, T., Maeo, K., Tabata, R., Kawai, T., Tanaka, K., Niwa, Y., Watanabe, Y., Nakamura, K., Kimura, T. and Ishiguro, S. Improved gateway binary vectors: high-performance vectors for creation of fusion constructs in transgenic analysis of plants. Biosci. Biotech. Biochem. 71, 2095-2100 (2007). doi.org/10.1271/bbb.70216
52. Saejung, W., Fujiyama, K., Takasaki, T., Ito, M., Hori, K., Malasit, P., Watanabe, Y., Kurane, I. and Seki, T. Production of dengue 2 envelope domain III in plant using TMV-based vector system. Vaccine 25, 6646-6654 (2007). doi.org/10.1016/j.vaccine.2007.06.029
53. Hori, K. and Watanabe, Y. Context analysis of termination codons in mRNA that are recognized by plant NMD. Plant Cell Physiol. 48, 1072-1078 (2007). doi.org/10.1093/pcp/pcm075
54. Takizawa, M., Hori, K., Inai, K., Takase, H., Hashimoto, T. and Watanabe, Y. A virus-induced gene silencing approach for the suppression of nicotine content in Nicotiana benthamiana. Plant Biotech. 24, 295-300 (2007). doi.org/10.5511/plantbiotechnology.24.295
55. Kurihara,Y., Inaba, N., Kutsuna, N., Takeda, A., Tagami, Y. and Watanabe, Y. The binding of tobamovirus replication protein with small RNA duplexes. J. Gen. Virol. 88, 2347-2352 (2007). doi.org/10.1099/vir.0.82994-0
56. Iwasaki, S., Takeda, A., Motose H. and Watanabe, Y. Characterization of Arabidopsis decapping proteins AtDCP1 and AtDCP2, which are essential for post-embryonic development. FEBS Letters 581, 2455-2459 (2007). doi.org/10.1016/j.febslet.2007.04.051
57. Tagami, Y. and Watanabe, Y. Effects of brefeldin A on the localization of Tobamovirus movement protein and cell-to-cell movement of the virus. Virology 361, 133-140 (2007). doi.org/10.1016/j.virol.2006.11.008
58. Motose, H., Watanabe, Y. and Fukuda, H. Glycosylphosphatidylinositol- anchored proteins in plants. In Frontiers in Life Science, (eds. M. Fujiwara, N. Sato and S. Ishiura). Kerala, India: Research Signpost. 111-126 (2006).
59. Fujiyama, K., Saejung, W., Yanagihara, I., Nakado, J., Misaki, R., Honda, T., Watanabe, Y. and Seki, T. In planta production of the immunogenic poliovirus peptide using TMV-based vector system. J. Biosci. Bioeng. 101, 398-402 (2006). doi.org/10.1263/jbb.101.398
60. Kurihara, Y., Yuasa, T. and Watanabe, Y. The in vivo interaction between DCL1 and HYL1 leads to efficient and precise processing of pri-miRNA in plant microRNA biogenesis. RNA12, 206-212 (2006). doi.org/10.1261/rna.2146906
61. Okamura, Y. and Watanabe, Y. Detecting RNA/DNA hybridization using double-labeled donor probes with enhanced FRET signals. In FRET and Beyond: Energy transfer nucleic acid probes, (ed. V. Didenko). Totowa, NJ: Humana Press. 43-56 (2006).
62. Oka-Kira, E., Tateno, K., Miura, K., Haga, T., Hayashi, M., Harada, K., Sato, S., Tabata, S., Shikazono, N., Tanaka, A., Watanabe, Y., Fukuhara, I., Nagata, T. and Kawaguchi, M. klavier (klv), A novel hypernodulation mutant of Lotus japonicus affected in vascular tissue organization and floral induction. Plant J. 44, 505-515 (2005). doi.org/10.1111/j.1365-313X.2005.02543.x
63. Sawada, H., Takeuchi, S., Matsumoto, K., Hamada, H., Kiba, A., Matsumoto, M., Watanabe, Y., Suzuki, K. and Hikichi, Y. A new Tobamovirus-resistance gene, Hk, in Capsicum annuum. J. Japan Soc. Hort. Sci. 74, 289-294 (2005). doi.org/10.2503/jjshs.74.289
64. Hori, K.and Watanabe, Y. UPF3 suppresses aberrant spliced mRNA in Arabidopsis. Plant J. 43, 530-540 (2005). doi.org/10.1111/j.1365-313X.2005.02473.x
65. Takizawa, M., Goto, A. and Watanabe, Y. Tobacco ubiquitin-activating enzymes NtE1A and NtE1B are induced by tobacco mosaic virus, wounding and stress hormones. Mol. Cells 19, 228-231 (2005). doi.org/10.1016/S1016-8478(23)13161-X
66. Yuasa,T., Sugiki, M. and Watanabe, Y. Activation of SIPK in response to UV-C irradiation : utility of a glutathione-S transferase-tagged plant MAP kinase by transient expression with agroinfiltration (2005). Plant Biotech. 22, 7-12. doi.org/10.5511/plantbiotechnology.22.7
67. Takahashi, H., Shimizu, A., Arie, T., Rosmalawati, S., Fukushima, S., Kikuchi, M., Hikichi, Y., Kanda, A., Takahashi, A., Kiba, A., Ohnishi, K., Ichinose, Y., Taguchi, F., Yasuda, C., Kodama, M., Egusa, M., Masuta, C., Sawada, H., Shibata, D., Hori, K. and Watanabe, Y. Catalog of Micro-Tom tomato responses to common fungal, bacterial and viral pathogens. J. Gen. Plant Pathol. 71, 8-22 (2005). doi.org/10.1007/s10327-004-0168-x
68. Kishi, M., Murata, T., Hasebe, M. and Watanabe, Y. An extraction method for tobacco mosaic virus movement protein localizing in plasmodesmata. Protoplasma 225, 85-92 (2005). doi.org/10.1007/s00709-004-0080-4
69. Szabo, B., Hori, K., Nakajima, A., Sasagawa, N., Watanabe, Y. and Ishiura, S. Expression of amyloid-β 1-40 and 1-42 peptides in Capsicum annum var. angulosum for oral immunization. ASSAY Drug Develop. Tech. 2, 383-388 (2004). doi.org/10.2183/pjab.95.020
70. Kurihara, Y. and Watanabe, Y. Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc. Natl. Acad. Sci. USA 101, 12753-12758 (2004). doi.org/10.1073/pnas.0403115101
71. Hori, K., Takizawa, M. and Watanabe, Y. Use of attenuated strain of tobamovirus for early detection of virus-induced gene silencing. Plant Biotech. 21, 135-142 (2004). doi.org/10.5511/plantbiotechnology.21.135
72. Kurihara, Y. and Watanabe, Y. A TMV-Cg mutant with a truncated coat protein induces cell death resembling the hypersensitive responses in Arabidopsis. Mol. Cells 17, 334-339 (2004). doi.org/10.1016/S1016-8478(23)13047-0
73. Kawakami, S., Watanabe, Y. and Beachy, R.N. Tobacco mosaic virus infection spreads cell to cell as intact replication complexes. Proc. Natl. Acad. Sci. USA 101, 6291-6296 (2004). doi.org/10.1073/pnas.0401221101
74. Hirashima, K. and Watanabe, Y. RNA helicase domain of tobamovirus replicase executes cell-to-cell movement possibly through collaboration with its non-conserved region. J. Virol, 77, 12357-12362 (2003). doi.org/10.1128/jvi.77.22.12357-12362.2003
75. Kurihara, Y.,and Watanabe, Y. Cross-protection against crucifer tobamovirus Cg was realized by its attenuated strain in Arabidopsis. Mol.Plant Pathol. 4, 259-269 (2003). doi.org/10.1046/j.1364-3703.2003.00174.x
76. Hori, K. and Watanabe, Y.　Construction of a tobamovirus vector that can systemically spread and express foreign gene products in Solanaceous plants. Plant Biotech., 20, 129-136 (2003). doi.org/10.5511/plantbiotechnology.20.129
77. Kawakami, S., Hori, K., Hosokawa, D., Okada, Y. and Watanabe, Y. Defective tobamovirus movement protein lacking wild type phosphorylation sites can be complemented by substitutions found in revertants. J. Virol., 77, 1452-1461 (2003). doi.org/10.1128/jvi.77.2.1452-1461.2003
78. Lim, A. A., Tachibana, S., Watanabe, Y. and Wong, S. M. Expression and purification of a neuropeptide nocistatin using two related plant viral vectors. Gene, 289, 69-79 (2002). doi.org/10.1016/S0378-1119(02)00468-7
79. Hirashima, K. and Watanabe, Y. Tobamovirus replicase coding region is involved in cell-to-cell movement. J Virol. 75, 8831-8836 (2001). doi.org/10.1128/jvi.75.18.8831-8836.2001
80. Okamura, Y., Kondo, S., Sase, I., Suga, T., Mise, K., Furusawa, I., Kawakami, S. and Watanabe, Y. Double-labeled donor probe can enhance the signal of fluorescence resonance energy transfer (FRET) in detection of nucleic acid hybridization. Nucl. Acids Res. 28, e107. (2000). doi.org/10.1093/nar/28.24.e107
81. Matsushita, Y., Hanazawa, K., Yoshioka, K., Oguchi, T., Kawakami, S., Watanabe, Y., Nishiguchi, M. and Nyunoya, H. In vitro phosphorylation of the movement protein of tomato mosaic tobamovirus by a cellular kinase. J Gen Virol, 81: 2095-2102. (2000). doi.org/10.1099/0022-1317-81-8-2095
82. Takahashi, T., Watanabe, Y., Natsuaki, T., Okuda, S. and Okada, Y. The movement protein of tomato mosaic tobamovirus induces tubular structures in tomato protoplasts. Ann. Phytopathol. Soc. Japan, 65: 612-615 (1999).　doi.org/10.3186/jjphytopath.65.612
83. Kawakami, S., Padgett, H. S., Hosokawa, D., Okada, Y., Beachy, R. N. and Watanabe, Y. Phosphorylation and/or presence of serine 37 in the movement protein of tomato mosaic tobamovirus is essential for intracellular localization and stability in vivo. J. Virol., 73: 6831-6840 (1999). doi.org/10.1128/jvi.73.8.6831-6840.1999

東京大学大学院総合文化研究科赴任前のもの

84. Tsuda, S., Yoshioka, K., Tanaka, T., Iwata, A., Yoshikawa, A., Watanabe, Y. and Okada, Y. Application of the human hepatitis B virus core antigen from transgenic tobacco plants for serological diagnosis. Vox Sanguinis, 74: 148-155 (1998).　 doi.org/10.1159/000030923
85. Tsuda, S., Kirita, M. and Watanabe, Y. Characterization of a pepper mild mottle tobamovirus strain capable of overcoming the L3 gene-mediated resistance, distinct from the resistance-breaking Italian isolate. Mol. Plant-Microbe Interact., 11: 327-331 (1998). doi.org/10.1094/MPMI.1998.11.4.327
86. Hamamoto, H., Watanabe, Y., Kamada, H. and Okada, Y. A single amino acid substitution in the virus-encoded replicase of tomato mosaic tobamovirus alters host specificity. Mol. Plant-Microbe Interat., 10: 1015-1018 (1997). doi.org/10.1094/MPMI.1997.10.8.1015
87. Kirita, M., Akutsu, K., Watanabe, Y. and Tsuda, S. Nucleotide sequence of the Japanese isolate of pepper mild mottle tobamovirus (TMV-P) RNA. Ann. Phytopathol. Soc. Japan, 63: 373-376 (1997). doi.org/10.3186/jjphytopath.63.373
88. Kawakami, S. and Watanabe, Y. Use of green fluorescent protein as a molecular tag of protein movement in vivo. Plant Biotech. 14: 127-130 (1997). doi.org/10.5511/plantbiotechnology.14.127
89. Padgett, H. S., Watanabe, Y. and Beachy, R. N. Identification of the TMV replicase sequence that activates the N gene-mediated hypersensitive response. Mol. Plant-Microbe Interact., 10: 709-715 (1997). doi.org/10.1094/MPMI.1997.10.6.709
90. Hamamoto, H., Watanabe, Y., Kamada, H. and Okada, Y. Amino acid changes in the putative replicase of tomato mosaic tobamovirus that overcome resistance in Tm-1 tomato. J. Gen. Virol., 78: 461-464 (1997). doi.org/10.1099/0022-1317-78-2-461
91. Beachy, R.N., Padgett, H.S., Kahn, T., Bendahmane, M., Fitchen, J.H., Heinlein, M., Watanabe, Y. and Epel, B.L. Cellular and molecular mechanisms of coat protein and movement protein mediated resistance against TMV. In :Biology of Plant-Microbe Interactions. (eds. G. Stacey, B. Mullin and P.M. Gresshoff) pp.259-264. International Society of Molecular Plant-Microbe Interactions (1996).
92. Padgett, H. S., Epel, B. L., Kahn, W. T., Heinlein, M. H., Watanabe, Y. and Beachy, R. N. Distribution of tobamovirus movement protein in infected leaves and implications for cell-to-cell spread of infection. Plant J., 10: 1079-1088 (1996). doi.org/10.1046/j.1365-313X.1996.10061079.x
93. Chen, J., Watanabe, Y., Sako, N., Ohshima, K. and Okada, Y. Mapping of host range restriction of the rakkyo strain of tobacco mosaic virus in Nicotiana tabacum cv. Bright Yellow. Virol., 226: 198-204 (1996) doi.org/10.1007/BF01718163
94. Chen, J., Sako, N., Ohshima, K. and Watanabe, Y. Generation of antiserum reactive with the 30K movement protein of the tobacco mosaic virus Rakkyo strain. Bulletin of the Faculty of Agriculture, Saga University 81, 19-26 (1996).
95. Chen, J., Sako, N., Ohshima, K. and Watanabe, Y. Specific detection of the Rakkyo strain of tobacco mosaic virus by reverse transcription and polymerase chain reaction. Ann. Phytopath. Soc. Japan, 62: 513-516 (1996) doi.org/10.3186/jjphytopath.62.513
96. Watanabe, Y., Ohnishi, J., Saito, H., Hosokawa, D. and Okada, Y. Addition of nucleotides similar to deleted CAA repeats in the 5' noncoding region of tomato mosaic virus RNA following propagation. J. Gen. Virol., 77: 2353-2357 (1996) doi.org/10.1099/0022-1317-77-9-2353
97. Chng, C.-G., Wong, S.M., Mahtani, P. H., Loh, C.S., Goh, C.J., Kao, M.C.C., Chung, M.C.M. and Watanabe, Y. The complete sequence of a Singapore isolate of odontoglossum ringspot virus and comparison with other tobamoviruses. Gene, 171: 155-161 (1996). doi.org/10.1016/0378-1119(96)00046-7
98. Chen, J., Watanabe, Y., Sako, N., Ohshima, K. and Okada, Y. Complete nucleotide sequence and synthesis of infectious in vitro transcripts from a full-length cDNA clone of a rakkyo strain of tobacco mosaic virus. Arch. Virol., 141: 885-900 (1996). doi.org/10.1007/BF01718163
99. Watanabe, Y., Ogawa, T., Takahashi, H., Ishida, I., Takeuchi, Y., Yamamoto, M. and Okada, Y. Resistance against multiple plant viruses in plants mediated by a double-stranded RNA specific ribonuclease. FEBS Lett., 372: 165-168 (1995). doi.org/10.1016/0014-5793(95)00901-K
100. Sugiyama, Y., Hamamoto, H., Takemoto, S., Watanabe, Y. and Okada, Y. Systemic production of foreign peptides on the particle surface of tobacco mosaic virus. FEBS Lett., 359: 247-250 (1995). doi.org/10.1016/0014-5793(95)00054-D
101. Ikeda, R., Watanabe, E., Watanabe, Y. and Okada, Y. Nucleotide sequence of tobamovirus Ob which can spread systemically in N gene tobacco. J. Gen. Virol., 74: 1939-1944 (1993). doi.org/10.1099/0022-1317-74-9-1939
102. Hosokawa, D., Watanabe, Y. and Okada. Y. Time course analysis of immunolocalization of coat protein and replicase proteins in protoplasts inoculated with tobacco mosaic virus. Ann. Phytopath. Soc. Japan, 59: 143-154 (1993). doi.org/10.3186/jjphytopath.59.143
103. Hamamoto, H., Sugiyama, Y., Nakagawa, N., Hashida, E., Matsunaga, Y., Takemoto, S., Watanabe, Y. and Okada, Y. A new tobacco mosaic virus vector and its use for the systemic production of angiotensin-I-converting enzyme inhibitor in transgenic tobacco and tomato. Bio/Technology 11: 930-932 (1993). doi.org/10.1038/nbt0893-930
104. Meshi, T., Watanabe, Y. and Okada, Y. Molecular pathology of tobacco mosaic virus revealed by biologically active cDNAs. In Genetic Engineering with Plant Viruses. (eds. T.M.A. Wilson and J.W. Davies) 149-186, CRC Press (1992).
105. Watanabe, Y., Ogawa, T. and Okada, Y. In vivo phosphorylation of the 30-kDa protein of tobacco mosaic virus. FEBS Lett., 313: 181-184 (1992). doi.org/10.1016/0014-5793(92)81440-W
106. Ogawa, T., Watanabe, Y. and Okada, Y. Cis-acting elements for in trans complementation of replication-defective mutant of tobacco mosaic virus. Virol., 191: 454-458 (1992). doi.org/10.1016/0042-6822(92)90209-8
107. Meshi, T., Hosokawa, D., Kawagishi, M., Watanabe, Y. and Okada, Y. Reinvestigation of intracellular localization of the 30K protein in tobacco protoplasts infected with tobacco mosaic virus RNA. Virol., 187: 809-813 (1992). doi.org/10.1016/0042-6822(92)90484-7
108. Yamafuji, R., Watanabe, Y., Meshi, T. and Okada, Y. Replication of TMV-L and Lta1 and their recombinants in TMV-resistant Tm-1 tomato protoplasts. Virol., 183: 99-105 (1991). doi.org/10.1016/0042-6822(91)90122-R
109. Takamatsu, N., Watanabe, Y., Iwasaki, T., Shiba, T., Meshi, T. and Okada, Y. Deletion analysis of the 5' untranslated leader sequence of tobacco mosaic virus RNA. J. Virol., 65: 1619-1622 (1991). doi.org/10.1128/jvi.65.3.1619-1622.1991
110. Ogawa, T., Watanabe, Y., Meshi, T. and Okada, Y. Trans complementation of virus-encoded replicase components of tobacco mosaic virus. Virol., 185: 580-584 (1991). doi.org/10.1016/0042-6822(91)90528-j
111. Anai, T., Hasegawa, K., Watanabe, Y., Uchimiya, H., Ishizaki, R. and Matsui, M. Isolation and analysis of cDNAs encoding small GTP-binding proteins of Arabidopsis thaliana. Gene, 108: 259-264 (1991). doi.org/10.1016/0378-1119(91)90442-E
112. Okada, Y., Meshi, T. and Watanabe, Y. Structure and functions of tobacco mosaic virus RNA. In Viral Genes and Plant Pathologenesis. (eds. T. P. Pirone and J. G. Shaw) pp.23-38 (Springer-Verlag) (1990).
113. Takamatsu, N., Watanabe, Y., Yanagi, H., Meshi, T., Shiba, T. and Okada, Y. Production of enkephalin in tobacco protoplasts using tobacco mosaic virus RNA vector. FEBS Lett., 269: 73-76 (1990). doi.org/10.1016/0014-5793(90)81121-4
114. Takamatsu, N., Watanabe, Y., Meshi, T. and Okada, Y. Mutational analysis of the pseudoknot region in the 3' noncoding region of tobacco mosaic virus RNA. J. Virol., 64: 3686-3693 (1990). doi.org/ 10.1128/JVI.64.8.3686-3693.1990
115. Toriyama, S. and Watanabe, Y. Characterization of single- and double-stranded RNAs in particles of rice stripe virus. J. Gen. Virol., 70: 505-511 (1989). doi.org/10.1099/0022-1317-70-3-505
116. Saito, T., Yamanaka, K., Watanabe, Y., Takamatsu, N., Meshi, T. and Okada, Y. Mutational analysis of the coat protein gene of tobacco mosaic virus in relation to hypersensitive response in tobacco plants with the N' gene. Virol., 173: 11-20 (1989). doi.org/10.1016/0042-6822(89)90217-1
117. Meshi, T., Motoyoshi, F., Adachi, A., Watanabe, Y., Takamatsu, N. and Okada, Y. Two concomitant base substitutions in the putative replicase genes of tobacco mosaic virus confers the ability to overcome the effects of a tomato resistance gene, Tm-1. EMBO J., 7: 1575-1581 (1988). doi.org/10.1002/j.1460-2075.1988.tb02982.x
118. Ishikawa, M., Meshi, T., Watanabe, Y. and Y. Okada. Replication of chimeric tobacco mosaic viruses which carry heterologous combinations of replicase genes and 3' noncoding regions. Virol., 164: 290-293 (1988). doi.org/10.1016/0042-6822(88)90648-4
119. Watanabe, Y., Morita, N., Nishiguchi, M. and Okada, Y. Attenuated strains of tobacco mosaic virus reduced synthesis of a viral protein with a cell-to-cell movement function. J. Mol. Biol., 194: 699-704 (1987). doi.org/10.1016/0022-2836(87)90247-6
120. Watanabe, Y., Meshi, T. and Y. Okada. Infection of tobacco protoplasts with in vitro transcribed tobacco mosaic virus RNA using an improved electroporation method. FEBS Lett., 219: 65-69 (1987). doi.org/10.1016/0014-5793(87)81191-2
121. Watanabe, Y., Kishibayashi, N., Motoyoshi, F. and Okada, Y. Characterization of Tm-1 gene action on replication of common isolates and a resistance-breaking isolate of TMV. Virol., 161: 527-532 (1987). doi.org/10.1016/0042-6822(87)90147-4
122. Meshi, T., Watanabe, Y., Saito, T., Sugimoto, A., Maeda, T. and Okada, Y. Function of the 30kd protein of tobacco mosaic virus: involvement in cell-to-cell movement and dispensability for replication. EMBO J., 6: 2557-2563 (1987). doi.org/10.1002/j.1460-2075.1987.tb02544.x
123. Watanabe, Y., I. Ooshika, T. Meshi and Y. Okada. Subcellular localization of the 30K protein in TMV-inoculated tobacco protoplasts. Virol., 152: 414-420 (1986). doi.org/10.1016/0042-6822(86)90143-1
124. Watanabe, Y. and Okada, Y. In vitro viral RNA synthesis by a subcellular fraction of TMV-inoculated tobacco protoplasts. Virol., 149: 64-73 (1986). doi.org/10.1016/0042-6822(86)90087-5
125. Saito, T., Watanabe, Y., Meshi, T. and Okada, Y. Preparation of antibodies that react with the large non-structural proteins of tobacco mosaic virus by using Escherichia coli expressed fragments. Mol. Gen. Genet., 205: 82-89 (1986). doi.org/10.1007/BF02428035
126. Watanabe, Y., Meshi,T. and Okada,Y. The initiation site for transcription of the TMV 30-kDa protein messenger RNA. FEBS Lett., 173: 247-250 (1984). doi.org/10.1016/0014-5793(84)81056-X
127. Watanabe, Y., Emori, Y. Ooshika, I., Meshi, T., Ohno, T. and Okada, Y. Synthesis of TMV-specific RNAs and proteins at the early stage of infection in tobacco protoplasts: Transient expression of the 30K protein and its mRNA. Virol., 133: 18-24 (1984). doi.org/10.1016/0042-6822(84)90421-5
128. Ooshika, I., Watanabe, Y., Meshi, T., Okada, Y., Igano, K., Inouye, K. and Yoshida, N. Identification of the 30K protein of TMV by immunoprecipitation with antibodies directed against a synthetic peptide. Virol., 132: 71-78 (1984). doi.org/10.1016/0042-6822(84)90092-8
129. Watanabe, Y., Ohno, T.and Okada, Y. Virus multiplication in tobacco protoplasts inoculated with tobacco mosaic virus RNA encapsulated in large unilamellar vesicle liposomes. Virol., 120: 478-480 (1982). doi.org/10.1016/0042-6822(82)90048-4

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日本語発表総説(2012年11月現在）

1. 放射線を科学的に理解する　　　鳥居寛之・小豆川勝見・渡辺雄一郎
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2. 身近な植物からの生物学への発信　　　渡辺雄一郎
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3. サイレンシングの機構　　　渡辺雄一郎
   植物の分子育種学 第12章、p.135-143.　2011年、講談社
4. 遺伝子組換え食品は安全なの？　　　大坪 憲弘・渡辺雄一郎
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5. 特集にあたって　　　渡辺雄一郎・曵地康史
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6. 植物におけるmiRNAの生合成経路　　　渡辺雄一郎
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7. 植物における小分子RNAの動態制御　　　渡辺雄一郎
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8. 身近な植物から学べる現代生物学　　　渡辺雄一郎
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12. 生物らしさを生み出すRNAの機能　　　渡辺雄一郎
    遺伝 62巻、p.73-74.　2008年、エヌティーエヌ
13. 植物に見いだされた短いRNAたち　　　渡辺雄一郎
    化学と工業 61巻、p.712-715.　2008年、日本化学会
14. 植物のmicroRNA　　　渡邊雄一郎
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    第1章　RNAiの原理　３節、p.14-15.　2008年、羊土社
15. RNAiの植物への応用　　　堀孝一・渡邊雄一郎
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16. 植物で発現するsmall RNA: ta-siRNAと nat-siRNAの生成過程と機能　　　田上優子・渡邊雄一郎
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28. 植物ウイルスの細胞間移行　　　渡邊雄一郎
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    島本功・渡邊雄一郎・柘植尚志編、19巻、p.163-171.　2004年、秀潤社
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30. ウイルスベクターによる有用遺伝子の発現　　　渡邊雄一郎・上田一郎
    化学と生物 41巻、p.183-189.　2003年
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    蛋白質/核酸/酵素　特集「植物の形作り」
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32. ウイルス　　　渡邊雄一郎
    AERA Mook 「植物学がわかる」 p.108-111.　2001年
33. 植物がうちに秘めていた身をまもる戦略　　　渡邊雄一郎
    科学 70巻、p.579-586.　2000年
34. プラズモデスマータを介した細胞相互作用　　　渡邊雄一郎
    植物細胞工学シリーズ12「新版　植物の形を決める分子機構」
    岡田清孝、町田泰則、松岡信編、p.235-238.　2000年
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36. 弱毒ウイルスの新規作出方法　　　渡邊雄一郎
    バイオコントロール研究会レポート(PSJ Biocont. Rept.) 6巻、p.66-72.　1999年