PUBLICATION研究業績 (2005年以降)

>原著論文  >総説　他 

原著論文

• K. Matsuse, M. Hara, R. Iwama, H. Horiuchi, and R. Fukuda. Phosphatidylserine synthase plays a critical role in the utilization of n-alkanes in the yeast Yarrowia lipolytica. FEMS Yeast Res., 24, foae030 (2024)
• N. Poopanitpan, S. Piampratom, P. Viriyathanit, T. Lertvatasilp, H. Horiuchi, R. Fukuda, and P. Kiatwuthin. SNF1 plays a crucial role in the utilization of n-alkane and transcriptional regulation of the genes involved in it in the yeast Yarrowia lipolytica. Heliyon, 10, e32886 (2024)
• C. Kimura-Ishimaru, S. Liang, K. Matsuse, R. Iwama, K. Sato, N. Watanabe, S. Tezaki, H. Horiuchi, and R. Fukuda. Mar1, a high mobility group box protein, regulates n-alkane adsorption and cell morphology of the dimorphic yeast Yarrowia lipolytica. Appl. Environ. Microbiol., 90, e00546-24 (2024).
• T. Suzawa, R. Iwama, R. Fukuda, and H. Horiuchi. Phosphatidylcholine levels regulate hyphal elongation and differentiation in the filamentous fungus Aspergillus oryzae. Sci. Rep., 14, 11729 (2024)
• R. Iwama, N. Okahashi, T. Suzawa, C. Yang, F. Matsuda, and H. Horiuchi. Comprehensive analysis of the composition of the major phospholipids during the asexual life cycle of the filamentous fungus Aspergillus nidulans. Biochim. Biophys. Acta - Mol. Cell Biol. Lipids., 1868(10), 159379 (2023)
• J. Jin, R. Iwama, and H. Horiuchi. The N-terminal disordered region of ChsB regulates its efficient transport to the hyphal apical surface in Aspergillus nidulans. Curr. Genet., 69, 175 (2023)
• M. Ogawa, R. Fukuda, R. Iwama, Y. Koyama, and H. Horiuchi. srdA mutations suppress the rseA/cpsA deletion mutant conidiation defect in Aspergillus nidulans. Sci. Rep., 13, 4285 (2023)
• N. Watanabe, R. Iwama, R. Murayama, T. Suzawa, Z. He, A. Mizuike, Y. Shiwa, H. Yoshikawa, H. Horiuchi, and R. Fukuda. Orthologs of Saccharomyces cerevisiae SFH2, genes encoding Sec14 family proteins, implicated in utilization of n-alkanes and filamentous growth in response to n-alkanes in Yarrowia lipolytica. FEMS Yeast Res., 22(1), foac006 (2022)
• Y. Tsuboi, T. Sakuma, T. Yamamoto, H. Horiuchi, F. Takahashi, K. Igarashi, H. Hagihara, and Y. Takimura. Gene manipulation in the Mucorales fungus Rhizopus oryzae using TALENs with exonuclease overexpression. FEMS Microbiol. Lett., 369(1), fnac010 (2022)
• J. Jin, R. Iwama, K. Takagi, and H. Horiuchi. AP-2 complex contributes to the hyphal-tip-localization of a chitin synthase in the filamentous fungus Aspergillus nidulans. Fungal. Biol., 125(10), 806-814 (2021)
• M. Ogawa, H. Wada, T. Yoshimura, A. Sato, R. Fukuda, Y. Koyama, and H. Horiuchi. Deletion of Aspergillus nidulans cpsA/rseA induces increased extracellular hydrolase production in solid-state culture partly through the high osmolarity glycerol pathway. J. Biosci. Bioeng., 131(6), 589-598 (2021)
• K. Takagi, A. Kikkawa, R. Iwama, R. Fukuda, and H. Horiuchi. Type II phosphatidylserine decarboxylase is crucial for the growth and morphogenesis of the filamentous fungus Aspergillus nidulans. J. Biosci. Bioeng., 131(2), 139-146 (2021)
• Tenagy, R. Iwama, S. Kobayashi, Y. Shiwa, H. Yoshikawa, H. Horiuchi, R. Fukuda, and S. Kajiwara. Acyl-CoA synthetases, Aal4 and Aal7, are involved in the utilization of exogenous fatty acids in Yarrowia lipolytica. J. Gen. Appl. Microbiol., 67(1), 9-14 (2021)
• A. Mizuike , S. Kobayashi , T. Rikukawa, A. Ohta, H. Horiuchi, and R. Fukuda. Suppression of respiratory growth defect of mitochondrial phosphatidylserine decarboxylase deficient mutant by overproduction of Sfh1, a Sec14 homolog, in yeast. PLoS ONE, 14, e0215009 (2019)
• A. Sugahara, A. Yoshimi, F. Shoji, T. Fujioka, K. Kawai, H. Umeyama, K. Komatsu, M. Enomoto, S. Kuwahara, D. Hagiwara, T. Katayama, H. Horiuchi, K. Miyazawa, M. Nakayama, and K. Abe. A novel antifungal compound Z-705 specifically inhibits protein kinase C of filamentous fungi. Appl. Environ. Microbiol., 85, e02923-18 (2019)
• S. Morisada, Y. Ono, T. Kodaira, H. Kishino, R. Ninomiya, N. Mori, H. Watanabe, A. Ohta, H. Horiuchi, and R. Fukuda. The membrane bound O-acyltransferase Ale1 transfers an acyl moiety to newly synthesised 2-alkyl-sn-glycero-3-phosphocholine in yeast. FEBS Lett., 592, 1829-1836 (2018)
• S. Morisada, I. Nishida, M. Kawamukai, H. Horiuchi, and R. Fukuda. Suppression of respiratory growth defect of mutant deficient in mitochondrial phospholipase A₁ by overexpression of genes involved in coenzyme Q synthesis in Saccharomyces cerevisiae. Biosci. Biotechnol. Biochem., 82, 1633-1639 (2018)
• R. Iwama, M. Hara, A. Mizuike, H. Horiuchi, and R. Fukuda. Osh6p, a homologue of the oxysterol-binding protein, is involved in production of functional cytochrome P450 belonging to CYP52 family in n-alkane-assimilating yeast Yarrowia lipolytica. Biochem. Biophys. Res. Commun., 499, 836-842 (2018)
• S. Tian, A. Ohta, H. Horiuchi, and R. Fukuda. Oxysterol-binding protein homologs mediate sterol transport from the endoplasmic reticulum to mitochondria in yeast. J. Biol. Chem., 293, 5636-5648 (2018)
• S. Tezaki, R. Iwama, S. Kobayashi, Y. Shiwa, H. Yoshikawa, A. Ohta, H. Horiuchi, and R. Fukuda. Δ12-Fatty acid desaturase is involved in growth at low temperature in yeast Yarrowia lipolytica. Biochem. Biophys. Res. Commun., 488, 165-170 (2017)
• R. Iwama, S. Kobayashi, C. Ishimaru, A. Ohta, H. Horiuchi, and R. Fukuda. Functional roles and substrate specificities of twelve cytochromes P450 belonging to CYP52 family in n-alkane assimilating yeast Yarrowia lipolytica. Fungal Genet. Biol., 91, 43-54 (2016)
• H. Hoshi, L. Zheng, A. Ohta, and H. Horiuchi. A Wiskott-Aldrich syndrome protein is involved in endocytosis in Aspergillus nidulans. Biosci. Biotechnol. Biochem., 80, 1802-1812 (2016)
• S. Kobayashi, S. Tezaki, H. Horiuchi, R. Fukuda, and A. Ohta. Acidic phospholipid-independent interaction of Yas3p, an Opi1-family transcriptional repressor of Yarrowia lipolytica, to the endoplasmic reticulum. Yeast, 32, 691-701 (2015)
• Tenagy, J. Park, R. Iwama, S. Kobayashi, A. Ohta, H. Horiuchi, and R. Fukuda. Involvement of acyl-CoA synthetase genes in n-alkane assimilation and fatty acid utilization in yeast Yarrowia lipolytica. FEMS Yeast Res., 15, fov031 (2015)
• S. Tian, A. Ohta, H. Horiuchi, and R. Fukuda. Evaluation of sterol transport from the endoplasmic reticulum to mitochondria using mitochondrially targeted bacterial sterol acyltransferase in Saccharomyces cerevisiae. Biosci. Biotechnol. Biochem., 79, 1608-1614 (2015)
• N. Takeshita, V. Wernet, M. Tsuizaki, N. Grün, H. Hoshi, A. Ohta, R. Fischer, and H. Horiuchi. Transportation of Aspergillus nidulans class III and V chitin synthases to the hyphal tips depends on conventional kinesin. PLoS ONE, 10, e0125937 (2015)
• R. Iwama, S. Kobayashi, A. Ohta, H. Horiuchi, and R. Fukuda. Alcohol dehydrogenases and an alcohol oxidase involved in the assimilation of exogenous fatty alcohols in Yarrowia lipolytica. FEMS Yeast Res., 15, fov014 (2015)
• T. Katayama, A. Ohta, and H. Horiuchi. Protein kinase C regulates the expression of cell wall-related genes in RlmA-dependent and independent manners in Aspergillus nidulans. Biosci. Biotechnol. Biochem., 79, 321-330 (2015)
• R. Iwama, S. Kobayashi, A. Ohta, H. Horiuchi, and R. Fukuda. Fatty aldehyde dehydrogenase multigene family involved in the assimilation of n-alkanes in Yarrowia lipolytica. J. Biol. Chem., 289, 33275-33286 (2014)
• S. Kobayashi, A. Mizuike, H. Horiuchi, R. Fukuda, and A. Ohta. Mitochondrially-targeted bacterial phosphatidylethanolamine methyltransferase sustained phosphatidylcholine synthesis of a Saccharomyces cerevisiae Δpi1Δpi2 double mutant without exogenous choline supply. Biochim. Biophys. Acta, 1841, 1264-1271 (2014)
• S. Tian, J. Ohtsuka, S. Wang, K. Nagata, M. Tanokura, A. Ohta, H. Horiuchi, and R. Fukuda. Human CTP:phosphoethanolamine cytidylyltransferase: Enzymatic properties and unequal catalytic roles of CTP-binding motifs in two cytidylyltransferase domains. Biochem. Biophys. Res. Commun., 449, 26-31(2014)
• H. Kishino, H. Eguchi, K. Takagi, H. Horiuchi, R. Fukuda, and A. Ohta. Acyl-chain remodeling of dioctanoyl-phosphatidylcholine in Saccharomyces cerevisiae mutant defective in de novo and salvage phosphatidylcholine synthesis. Biochem. Biophys. Res. Commun., 445, 289-293 (2014)
• S. Kobayashi, K. Hirakawa, H. Horiuchi, R. Fukuda, and A. Ohta. Phosphatidic acid and phosphoinositides facilitate liposome association of Yas3p and potentiate derepression of ARE1 (Alkane-Responsive Element One)-mediated transcription control. Fungal Genet. Biol., 61, 100-110 (2013)
• Y. Sagehashi, H. Horiuchi, R. Fukuda, and A. Ohta. Identification and characterization of a gene encoding an ABC transporter expressed in dicarboxylic acid-producing yeast Candida maltosa. Biosci. Biotechnol. Biochem., 77, 2502-2504 (2013)
• H. Nishida, T. Katayama, Y. Suzuki, S. Kondo, and H. Horiuchi. Base composition and nucleosome density in exonic and intronic regions in genes of the filamentous ascomycetes Aspergillus nidulans and Aspergillus oryzae. Gene, 525, 5-10 (2013)
• W. Sheng, S. Yamashita, A. Ohta, and H. Horiuchi. Functional differences of chitin synthases of Yarrowia lipolytica. Biosci. Biotechnol. Biochem., 77, 1275-1281 (2013)
• K. Mori, R. Iwama, S. Kobayashi, H. Horiuchi, R. Fukuda, and A. Ohta. Transcriptional repression by glycerol of genes involved in the assimilation of n-alkanes and fatty acids in yeast Yarrowia lipolytica. FEMS Yeast Res., 13, 233-240 (2013)
• M. Tsuizaki, A. Ohta, and H. Horiuchi. Myosin motor-like domain of class VI chitin synthase CsmB of Aspergillus nidulans is not functionally equivalent to that of class V chitin synthase CsmA. Biosci. Biotechnol. Biochem., 77, 369-374 (2013)
• T. Katayama, H. Uchida, A. Ohta, and H. Horiuchi. Involvement of protein kinase C in the suppression of apoptosis and in polarity establishment in Aspergillus nidulans under conditions of heat stress. PLoS ONE, 7, e50503 (2012)
• K. Takagi, K. Iwamoto, S. Kobayashi, H. Horiuchi, R. Fukuda, and A. Ohta. Involvement of Golgi-associated retrograde protein complex in the recycling of the putative Dnf aminophospholipid flippases in yeast. Biochem. Biophys. Res. Commun., 417, 490-494 (2012)
• H. Takai, R. Iwama, S. Kobayashi, H. Horiuchi, R. Fukuda, and A. Ohta. Construction and characterization of a Yarrowia lipolytica mutant lacking genes encoding cytochromes P450 subfamily 52. Fungal Genet Biol., 49, 58-64 (2012)
• T. Akao, I. Yashiro, A. Hosoyama, H. Kitagaki, H. Horikawa, D. Watanabe, R. Akada, Y. Ando, S. Harashima, T. Inoue, Y. Inoue, S. Kajiwara, K. Kitamoto, N. Kitamoto, O. Kobayashi, S. Kuhara, T. Masubuchi, H. Mizoguchi, Y. Nakao, A. Nakazato, M. Namise, T. Oba, T. Ogata, A. Ohta, M. Sato, S. Shibasaki, Y. Takatsume, S. Tanimoto, H. Tsuboi, A. Nishimura, K. Yoda, T. Ishikawa, K. Iwashita, N. Fujita, and H. Shimoi. Whole-genome sequencing of sake yeast Saccharomyces cerevisiae. Kyokai no. 7. DNA Res., 18, 423-434 (2011)
• N. Poopanitpan, S. Kobayashi, R. Fukuda, H. Horiuchi, and A. Ohta. An ortholog of farA of Aspergillus nidulans is implicated in the transcriptional activation of genes involved in fatty acid utilization in the yeast Yarrowia lipolytica. Biochem. Biophys. Res. Commun., 402, 731-735 (2010)
• L. Deng, R. Fukuda, T. Kakihara, K. Narita, and A. Ohta. Incorporation and remodeling of phosphatidylethanolamine containing short acyl residues in yeast. Biochim. Biophys. Acta, 1801, 635–645 (2010)
• K. Fukuda, K. Yamada, K. Deoka, S. Yamashita, A. Ohta, and H. Horiuchi. Class III chitin synthase, ChsB, of Aspergillus nidulans localizes at the sites of polarized cell wall synthesis and is required for conidia development. Eukaryot. Cell, 8, 945-956 (2009)
• M. Tsuizaki, N. Takeshita, A. Ohta, and H. Horiuchi. Myosin motor-like domain of the class VI chitin synthase CsmB is essential to its functions in Aspergillus nidulans. Biosci. Biotechnol. Biochem., 73, 1163-1167 (2009)
• P.W.J. de Groot, B.W. Brandt, H. Horiuchi, A.F.J. Ram, C.G. de Koster, and F.M. Klis. Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans. Fungal Genet. Biol., 46, S72-S81 (2009)
• K. Hirakawa, S. Kobayashi, T. Inoue, S. Endoh-Yamagami, R. Fukuda, and A. Ohta. Yas3p, an Opi1-family transcription factor regulates cytochrome P450 expression in response to n-alkanes in Yarrowia lipolytica. J. Biol. Chem., 284, 7126-7137 (2009)
• Y. Ono, R. Fukuda, and A. Ohta. Involvement of LEM3/ROS3 in the uptake of phosphatidylcholine with short acyl chains in Saccharomyces cerevisiae. Biosci. Biotechnol. Biochem., 73, 750-752 (2009)
• K. Tanaka, R. Fukuda, Y. Ono, H. Eguchi, S. Nagasawa, Y. Nakatani, H. Watanabe, H. Nakanishi, R. Taguchi, and A. Ohta. Incorporation and remodeling of extracellular phosphatidylcholine with short acyl residues in Saccharomyces cerevisiae. Biochim. Biophys. Acta, 1781, 391-399 (2008)
• L. Deng, J. Nagasawa, Y. Ono, Y. Ishikawa, T. Kakihara, R. Fukuda, and A. Ohta. Manipulation of major membrane lipid synthesis and its effects on sporulation in Saccharomyces cerevisiae. Biosci. Biotechnol. Biochem., 72, 2362-2368 (2008)
• S. Kobayashi, K. Hirakawa, R. Fukuda, and A. Ohta. Disruption of SCS2 ortholog in alkane-assimilating yeast Yarrowia lipolytica impairs its growth on n-decane, but does not impair inositol prototrophy. Biosci. Biotechnol. Biochem., 72, 2219-2223 (2008)
• H. Yamazaki, A. Tanaka, J. Kaneko, A. Ohta, and H. Horiuchi. Aspergillus nidulans ChiA is a glycosylphosphatidylinositol (GPI)-anchored chitinase specifically localized at polarized growth sites. Fungal Genet. Biol., 45, 963-972 (2008)
• W. Pungrasmi, H-S. Lee, A. Yokota, and A. Ohta. Pseudomonas japonica sp. nov., a novel species that assimilates straight chain alkylphenols. J. Gen. Appl. Microbiol., 54, 61-69 (2008)
• W. Pungrasmi and A. Ohta. Polyphasic approaches to identification of predominant microbial community in an activated sludge system. Thai Environmental Engineering Journal, 21(2) , 1-10 (2007)
• R. Oshima, K. Yoshinaga, Y. Ihara-Ohoria, R. Fukuda, A. Ohta, H. Uchimiya, and M. Kawai-Yamada. The Bax Inhibitor-1 needs a functional electron transport chain for cell death suppression. FEBS Lett., 581, 4627-4632 (2007)
• L. Deng, T. Kakihara, R. Fukuda, and A. Ohta. Isolation and characterization of a mutant defective in utilization of exogenous phosphatidylethanolamine in Saccharomyces cerevisiae. J. Gen. Appl. Microbiol., 53, 255-258 (2007)
• L. Deng, T. Kakihara, R. Fukuda, and A. Ohta. Construction of a yeast strain with regulatable phospholipid synthesis for analysis of the uptake and metabolism of phosphatidylethanolamine with short acyl chains. Biosci. Biotechnol. Biochem., 71, 2313-2315 (2007)
• M. Ichinomiya, H. Uchida, Y. Koshi, A. Ohta, and H. Horiuchi. A protein kinase C-ncoding gene, pkcA, is essential to the viability of the filamentous fungus Aspergillus nidulans. Biosci. Biotechnol. Biochem., 71, 2787-2799 (2007)
• H. Yamazaki, D. Yamazaki, N. Takaya, M. Takagi, A. Ohta, and H. Horiuchi. A chitinase gene, chiB, involved in the autolytic process of Aspergillus nidulans. Curr. Genet., 51, 89-98 (2007)
• M. Takahashi, M. Murate, M Fukuda, S. B. Sato, A. Ohta, and T. Kobayashi. Cholesterol controls lipid endocytosis through rab11. Mol. Biol. Cell, 18, 2667-2677 (2007)
• T. Akao, M. Sano, O. Yamada, T. Akeno, K. Fujii, K. Goto, S. Ohashi-Kunihiro, K. Takase, M. Yasukawa-Watanabe, K. Yamaguchi, Y. Kurihara, J.I. Maruyama, P.R. Juvvadi, A. Tanaka, Y. Hata, Y. Koyama, S. Yamaguchi, N. Kitamoto, K. Gomi, K. Abe, M. Takeuchi, T. Kobayashi, H. Horiuchi, K. Kitamoto, Y. Kashiwagi, M. Machida, and O. Akita. Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions. DNA Res., 14, 47-57 (2007)
• T. Kogure, H. Horiuchi, H. Matsuda, M. Arie, M. Takagi, and A. Ohta. Enhanced induction of cytochromes P450alk that oxidize methyl-ends of n-alkanes and fatty acids in the long-chain dicarboxylic acid-hyperproducing mutant of Candida maltosa. FEMS Microbiology Letters., 271, 106-111 (2007)
• S. Endoh-Yamagami, K. Hirakawa, D. Morioka, R. Fukuda, and A. Ohta. Basic Helix-Loop-Helix transcription factor heterocomplex of Yas1p and Yas2p regulates cytochrome P450 expression in response to alkanes in the yeast Yarrowia lipolytica. Eukaryot. Cell, 6, 734-743 (2007)
• J. Ohtsuka, K. Nagata, W-C. Lee, Y. Ono, R. Fukuda, A. Ohta, and M. Tanokura. Crystallization and preliminary X-ray analsis of CTP: phosphoethanolamine cytidylyltransferase (ECT) from Saccharomyces cerevisiae. Acta Cryst., F62, 1003-1005(2006)
• H-S. Lee, S. Sasagawa, S. Kato, R. Fukuda, H. Horiuchi, and A. Ohta. Yeast two-hybrid detection systems that are highly sensitive to a certain kind of endocrine disruptors. Biosci. Biotechnol. Biochem., 70, 521-524(2006)
• D. A. Stevens, M. Ichinomiya, Y. Koshi, and H. Horiuchi. Escape of Candida from caspofungin inhibition at supra-MIC concentrations (paradoxical effect) accomplished by increased cell wall chitin; Evidence for beta-1,6-glucan synthesis inhibition by caspofungin. Antimicrob. Agents Chemother., 50, 3160-3161 (2006)
• N. Takeshita, S. Yamashita, A. Ohta, and H. Horiuchi. Aspergillus nidulans class V and VI chitin synthases CsmA and CsmB, each with a myosin motor-like domain, perform compensatory functions that are essential for hyphal tip growth. Mol. Microbiol., 59, 1380-1394 (2006)
• M. Ichinomiya, A. Ohta, and H. Horiuchi. Expression of asexual developmental regulator gene abaA is affected in the double mutants of class I and class II chitin synthase genes, chsC and chsA, of Aspergillus nidulans. Curr. Genet., 48, 171-183 (2005)
• M. Ichinomiya, E. Yamada, S. Yamashita, A. Ohta, and H. Horiuchi.　 Class I and class II chitin synthases are involved in septum formation in the filamentous fungus Aspergillus nidulans. Eukaryotic Cell, 4, 1125-1136 (2005)
• N. Takeshita, A. Ohta, and H. Horiuchi. CsmA, a class V chitin synthase with a myosin motor-like domain, is localized through direct interaction with the actin cytoskeleton in Aspergillus nidulans. Mol. Biol. Cell, 16, 1961-1970 (2005)
• E. Yamada, M. Ichinomiya, A. Ohta, and H. Horiuchi. The class V chitin synthase gene csmA is crucial for the growth of the chsA chsC double mutant in Asperllgillus nidulans. Biosci. Biotechnol. Biochem., 69, 87-97 (2005)
• T. Kogure, M. Takagi, and A. Ohta. n-Alkane and clofibrate, a peroxisome proliferator, activate transcription of ALK2 gene rncoding cytochrome P450alk2 through distinct cis-acting promotereElements in Candida maltosa. Biochem. Biophys. Res. Commun., 329, 78-86　(2005)
• W. C. Nierman, A. Pain, M. J. Anderson, J. R. Wortman, H. S. Kim, J. Arroyo, M. Berriman, K. Abe, D. B. Archer, C. Bermejo, J. Bennett, P. Bowyer, D. Chen, M. Collins, R. Coulsen, R. Davies, P. S. Dyer, M. Farman, N. Fedorova, T. V. Feldblyum, R. Fischer, N. Fosker, A. Fraser, J. L. Garcia, M. J. Garcia, A. Goble, G. H. Goldman, K. Gomi, S. Griffith-Jones, R. Gwilliam, B. Haas, H. Haas, D. Harris, H. Horiuchi, J. Huang, S. Humphray, J. Jimenez, N. Keller, H. Khouri, K. Kitamoto, T. Kobayashi, S. Konzack, R. Kulkarni, T. Kumagai, A. Lafton, J. P. Latge, W. Li, A. Lord, C. Lu, W. H. Majoros, G. S. May, B. L. Miller, Y. Mohamoud, M. Molina, M. Monod, I. Mouyna, S. Mulligan, L. Murphy, S. O'Neil, I. Paulsen, M. A. Penalva, M. Pertea, C. Price, B. L. Pritchard, M. A. Quail, E. Rabbinowitsch, N. Rawlins, M. A. Rajandream, U. Reichard, H. Renauld, G. D. Robson, S. Rodriguez de Cordoba, J. M. Rodriguez-Pena, C. M. Ronning, S. Rutter, S. L. Salzberg, M. Sanchez, J. C. Sanchez-Ferrero, D. Saunders, K. Seeger, R. Squares, S. Squares, M. Takeuchi, F. Tekaia, G. Turner, C. R. Vazquez de Aldana, J. Weidman, O. White, J. Woodward, J. H. Yu, C. Fraser, J. E. Galagan, K. Asai, M. Machida, N. Hall, B. Barrell, and D. W. Denning. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature, 438, 1151-1156 (2005)
• M. Machida, K. Asai, M. Sano, T. Tanaka, T. Kumagai, G. Terai, K. Kusumoto, T. Arima, O. Akita, Y. Kashiwagi, K. Abe, K. Gomi, H. Horiuchi, K. Kitamoto, T. Kobayashi, M. Takeuchi, D. W. Denning, J. E. Galagan, W. C. Nierman, J. Yu, D. B. Archer, J. W. Bennett, D. Bhatnagar, T. E. Cleveland, N. D. Fedorova, O. Gotoh, H. Horikawa, A. Hosoyama, M. Ichinomiya, R. Igarashi, K. Iwashita, P. R. Juvvadi, M. Kato, Y. Kato, T. Kin, A. Kokubun, H. Maeda, N. Maeyama, J. Maruyama, H. Nagasaki, T. Nakajima, K. Oda, K. Okada, I. Paulsen, K. Sakamoto, T. Sawano, M. Takahashi, K. Takase, Y. Terabayashi, J. R. Wortman, O. Yamada, Y. Yamagata, H. Anazawa, Y. Hata, Y. Koide, T. Komori, Y. Koyama, T. Minetoki, S. Suharnan, A. Tanaka, K. Isono, S. Kuhara, N. Ogasawara, and H. Kikuchi. Genome sequencing and analysis of Aspergillus oryzae. Nature, 438, 1157-1161 (2005)
• M. Kakimoto, A. Kobayashi, R. Fukuda, Y. Ono, A. Ohta, and E. Yoshimura. Genome-wide screening of aluminum tolerance in Saccharomyces cerevisiae. BioMetals, 8, 467-474 (2005)

総説　他

• R. Iwama. Phospholipid dynamics in Aspergillus species: relations between biological membrane composition and cellular morphology Biosci. Biotechnol. Biochem., zbae161 (2024)
• 岩間亮 「糸状菌のライフサイクルにおけるダイナミックな生体膜組成変動」 生物物理、64(2)、97–99 (2024)
• 福田良一 「二形性酵母Yarrowia lipolyticaにおけるn-アルカンの代謝と脂質輸送タンパク質の役割」 アグリバイオ、7(8)、72–75 (2023)
• 岩間亮、堀内裕之 「生体膜脂質から迫る糸状菌の細胞形態制御」 アグリバイオ、7(8)、76–78 (2023)
• R. Fukuda. Utilization of n-alkane and roles of lipid transfer proteins in Yarrowia lipolytica. World J. Microbiol. Biotechnol., 39, 97 (2023)
• 髙木正道、高久洋暁、福田良一 「新産業酵母研究会（MINCY）の10年を振り返る」 化学と生物、61, 91-97 (2023)
• 堀内裕之 「糸状菌分子生物学研究会 — 日本人に身近な糸状菌を現代の視点で」 化学、77(11), 45–47 (2022)
• 福田良一 「酵母におけるオルガネラ間のステロール輸送」 バイオサイエンスとインダストリー、77, 28-31 (2019)
• R. Fukuda and A. Ohta. Enzymes for aerobic degradation of alkanes in yeasts. in “Aerobic Utilization of Hydrocarbons, Oils and Lipids” Handbook of Hydrocarbon and Lipid Microbiology, ed. by F. Rojo, Springer, Cham (2017)
• R. Fukuda and A. Ohta. Genetic features and regulation of n-alkane metabolism in yeasts. in “Aerobic Utilization of Hydrocarbons, Oils and Lipids” Handbook of Hydrocarbon and Lipid Microbiology, ed. by F. Rojo, Springer, Cham (2017)
• 岩間亮、福田良一 「Yarrowia lipolyticaにおける炭化水素の代謝」 生物工学会誌、94: 259-262 (2016)
• H. Horiuchi and T. Katayama. Protein kinase C of filamentous fungi and its roles in the stresses affecting hyphal morphogenesis and conidiation. in “Stress Biology of Yeasts and Fungi: Applications for Industrial Brewing and Fermentation” ed. by H. Takagi and H. Kitagaki., p. 185-198, Springer. (2015)
• 片山琢也、堀内裕之 「糸状菌の形態形成過程におけるプロテインキナーゼCの機能」 化学と生物、52, 490-491 (2014）
• 太田明徳、福田良一、川向誠、戒能智宏 「13章 脂質の代謝 原島俊、高木博史編「酵母の生命科学と生物工学ー産業応用から基礎科学へ」、化学同人、199-224 (2013)
• R. Fukuda and A. Ohta. Utilization of hydrophobic substrate by Yarrowia lipolytica in “Yarrowia lipolytica-Genetics, Genomics, and Physiology” Microbiology Monographs Vol. 25. ed. by G. Barth. Springer, 111-119 (2013)
• R. Fukuda. Metabolism of hydrophobic carbon source and it regulation in n-alkane-assimilating yeast Yarrowia lipolytica. Biosci. Biotechnol. Biochem., 77, 1149-1154 (2013)
• 堀内裕之 「麹菌とその近縁糸状菌のキチン合成酵素とキチナーゼ」 北本勝ひこ 編「発酵・醸造食品の最新技術と機能性II」、シーエムシー出版、東京、103-110 (2011)
• H. Horiuchi. Functional diversity of chitin synthases of Aspergillus nidulans in hyphal growth, conidiophore development and septum formation. Med. Mycol., 47, S47-S52 (2009)
• 堀内裕之 「糸状菌におけるプロテインキナーゼCの機能」 化学と生物、47, 794-799（2009）
• J.R. Wortman, J.M. Gilsenan, V. Joardar, J. Deegan, J. Clutterbuck, M.R. Andersen, D. Archer, M. Bencina, G. Braus, P. Coutinho, H. von Doren, J. Doonan, A.J.M. Driessen, P. Durek, E. Espeso, E. Fekete, M. Flipphi, C.G. Estrada, S. Geyens, G. Goldman, P.W.J. de Groot, K. Hansen, S.D. Harris, T. Heinekamp, K. Helmstaedt, B. Henrissat, G. Hofmann, T. Homan, T. Horio, H. Horiuchi, S. James, M. Jones, L. Karaffa, Z. Karanyi, M. Kato, N. Keller, D.E. Kelly, J.A.K.W. Kiel, J-M. Kim, I.J. van der Klei, F.M. Klis, A. Kovalchuk, N. Krasevec, CP. Kubicek, B Liu, A. MacCabe, V. Meyer, P. Mirabito, M. Miskei, M. Mos, J. Mullins, D.R. Nelson, J. Nielsen, B.R. Oakley, S.A. Osmani, T. Pakula, A. Paszewski, I. Paulsen, S. Pilsyk, I. Pocsi, P.J. Punt, A.F.J. Ram, Q. Ren, X. Robellet, G. Robson, B. Seiboth, P. van Solingen, T. Specht, J. Sun, N. Taheri-Talesh, N. Takeshita, D. Ussery, P.A. vanKuyk, H. Visser, P.J.I. van de Vondervoort, R.P. de Vries, J. Walton, X. Xiang, Y. Xiong, A.P. Zeng, B.W. Brandt, M.J. Cornell, C.A.M.J.J. van den Hondel, J. Visser, S.G. Oliver, and G. Turner. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal Genet. Biol., 46, S2-S13 (2009)
• 福田良一、太田明徳　 「脂質代謝」 大隅良典、下田親編「酵母のすべて」、シュプリンガー・ジャパン、p. 180-189 (2007)