業　績　＜Publications＞

2022.4～2023.3

  • Uchida Y,Shigenobu S,Takeda H,Furusawa C,Irie N , Potential contribution of intrinsic developmental stability toward body plan conservation , BMC Biol. , 2022

  • Tsutsumi M,Saito N,Koyabu D,Furusawa C , A method for morphological feature extraction based on variational auto-encoder : an application to mandible shape , Preprint , 2022

  • Himeoka Y,Kirkegaard JB,Mitarai N,Krishna S , Structural determinants of relaxation dynamics in chemical reaction networks , Preprint , 2022

  • Shibai A,Kotani H,Sakata N,Furusawa C,Tsuru S , Purifying selection enduringly acts on the sequence evolution of highly expressed proteins in Escherichia coli , G3 (Bethesda) , 2022

  • Koga R,Moriyama M,Onodera-Tanifuji N,Ishii Y,Takai H,Mizutani M,Oguchi K,Okura R,Suzuki S,Gotoh Y,Hayashi T,Seki M,Suzuki Y,Nishide Y,Hosokawa T,Wakamoto Y,Furusawa C,Fukatsu T , Single mutation makes Escherichia coli an insect mutualist , Nat. Microbiol. , 2022

  • Iwasawa J,Maeda T,Shibai A,Kotani H,Kawada M,Furusawa C , Multi-dimensional antibiotic resistance time series reveals the phenotype-based fitness landscape for Escherichia coli , Preprint , 2022

  • Shibai A,Kotani H,Kawada M,Yokoi N,Furusawa C , Development of a device that generates a temperature gradient in a microtiter plate for microbial culture , SLAS Technol. , 2022

  • Maeda Y,Mizuuchi R,Shigenobu S,Shibai A,Kotani H,Furusawa C,Ichihashi N , Experimental evidence for the correlation between RNA structural fluctuations and the frequency of beneficial mutations , RNA , 2022

  • Iwasawa J,Maeda T,Shibai A,Kotani H,Kawada M,Furusawa C , Analysis of the evolution of resistance to multiple antibiotics enables prediction of the Escherichia coli phenotype-based fitness landscape , PLoS Biol. , 2022

  • Himeoka Y,Mitarai N , Emergence of growth and dormancy from a kinetic model of the Escherichia coli central carbon metabolism , Phys. Rev. Res. , 2022

  • Seike T,Takekata H,Uchida Y,Sakata N,Furusawa C,Matsuda F , Wickerhamiella bidentis sp. nov., a novel yeast species isolated from flowers and insects in Japan , Int. J. Syst. Evol. Microbiol. , 2023

  • Uchida Y,Takeda H,Furusawa C,Irie N , Stability in gene expression and body-plan development leads to evolutionary conservation , Evodevo , 2023

  • Abdellatef SA,Tadakuma H,Yan K,Fujiwara T,Fukumoto K,Kondo Y,Takazaki H,Boudria R,Yasunaga T,Higuchi H,Hirose K , Oscillatory movement of a dynein-microtubule complex crosslinked with DNA origami , Elife , 2022

  • Liu M,Sovrovic M,Suga H,Jongkees SAK , Phosphine addition to dehydroalanine for peptide modification , Org. Biomol. Chem. , 2022

  • Morgan M,Ikenoue T,Suga H,Wolberger C , Potent macrocycle inhibitors of the human SAGA deubiquitinating module , Cell Chem. Biol. , 2022

  • Katoh T,Suga H , In vitro genetic code reprogramming for the expansion of usable noncanonical amino acids , Annu. Rev. Biochem. , 2022

  • Vinogradov AA,Chang JS,Onaka H,Goto Y,Suga H , Accurate models of substrate preferences of post-translational modification enzymes from a combination of mRNA display and deep learning , ACS Cent. Sci. , 2022

  • Nagano M,Huang Y,Obexer R,Suga H , Chemical peptide macrolactonization via intramolecular S ‐to‐ S ‐to‐ O acyl transfer , Pept. Sci. (Hoboken) , 2022

  • Tashima T , Brain cancer chemotherapy through a delivery system across the blood-brain barrier into the brain based on receptor-mediated transcytosis using monoclonal antibody conjugates , Biomedicines , 2022

  • Kagami S , Strategy for economic recovery from the COVID-19 disaster: Japan aims to become a startup nation again , Clusters of Innovation in the Age of Disruption , 2022

  • Katoh T,Goto Y,Suga H , In vitro selection of thioether-closed macrocyclic peptide ligands by means of the RaPID system , Methods Mol. Biol. , 2022

  • Zhang Y,Hamada K,Nguyen DT,Inoue S,Satake M,Kobayashi S,Okada C,Ogata K,Okada M,Sengoku T,Goto Y,Suga H , LimF is a versatile prenyltransferase for histidine-C-geranylation on diverse non-natural substrates , Nat. Catal. , 2022

  • Nakamuro T,Kamei K,Sun K,Bode JW,Harano K,Nakamura E , Time-resolved atomistic imaging and statistical analysis of daptomycin oligomers with and without calcium ions , J. Am. Chem. Soc. , 2022

  • Dreier JE,Prestel A,Martins JM,Brﾃｸndum SS,Nielsen O,Garbers AE,Suga H,Boomsma W,Rogers JM,Hartmann-Petersen R,Kragelund BB , A context-dependent and disordered ubiquitin-binding motif , Cell. Mol. Life Sci. , 2022

  • Sugano-Nakamura N,Matoba K,Hirose M,Bashiruddin NK,Matsunaga Y,Yamashita K,Hirata K,Yamamoto M,Arimori T,Suga H,Takagi J , De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function , Structure , 2022

  • Wakabayashi R,Kawai M,Katoh T,Suga H , In vitro selection of macrocyclic α/β3-peptides against human EGFR , J. Am. Chem. Soc. , 2022

  • Dai SA,Hu Q,Gao R,Blythe EE,Touhara KK,Peacock H,Zhang Z,von Zastrow M,Suga H,Shokat KM , State-selective modulation of heterotrimeric Gαs signaling with macrocyclic peptides , Cell , 2022

  • Vamisetti GB,Saha A,Huang YJ,Vanjari R,Mann G,Gutbrod J,Ayoub N,Suga H,Brik A , Selective macrocyclic peptide modulators of Lys63-linked ubiquitin chains disrupt DNA damage repair , Nat. Commun. , 2022

  • Zhang Y,Vinogradov AA,Chang JS,Goto Y,Suga H , Solid-phase-based synthesis of lactazole-like thiopeptides , Org. Lett. , 2022

  • Vinogradov AA,Zhang Y,Hamada K,Chang JS,Okada C,Nishimura H,Terasaka N,Goto Y,Ogata K,Sengoku T,Onaka H,Suga H , De Novo discovery of thiopeptide pseudo-natural products acting as potent and selective TNIK kinase inhibitors , J. Am. Chem. Soc. , 2022

  • Kuroda T,Huang Y,Nishio S,Goto Y,Suga H , Post-translational backbone-acyl shift yields natural product-like peptides bearing hydroxyhydrocarbon units , Nat. Chem. , 2022

  • Ono T,Tabata KV,Goto Y,Saito Y,Suga H,Noji H,Morimoto J,Sando S , Label-free quantification of passive membrane permeability of cyclic peptides across lipid bilayers: penetration speed of cyclosporin A across lipid bilayers , Chem. Sci. , 2023

  • Alteen MG,Peacock H,Meek RW,Busmann JA,Zhu S,Davies GJ,Suga H,Vocadlo DJ , Potent DE Novo macrocyclic peptides that inhibit O-GlcNAc transferase through an allosteric mechanism , Angew. Chem. Int. Ed Engl. , 2023

  • Sakai K,Sugano-Nakamura N,Mihara E,Rojas-Chaverra NM,Watanabe S,Sato H,Imamura R,Voon DC,Sakai I,Yamasaki C,Tateno C,Shibata M,Suga H,Takagi J,Matsumoto K , Designing receptor agonists with enhanced pharmacokinetics by grafting macrocyclic peptides into fragment crystallizable regions , Nat. Biomed. Eng. , 2023

  • Katoh T,Suga H , Drop-off-reinitiation at the amino termini of nascent peptides and its regulation by IF3, EF-G, and RRF , RNA , 2023

  • Katoh T,Suga H , Ribosomal incorporation of negatively charged d-α- and N-methyl-l-α-amino acids enhanced by EF-Sep , Philos. Trans. R. Soc. Lond. B Biol. Sci. , 2023

  • Pietz HL,Abbas A,Johnson ZL,Oldham ML,Suga H,Chen J , A macrocyclic peptide inhibitor traps MRP1 in a catalytically incompetent conformation , Proc. Natl. Acad. Sci. U. S. A. , 2023

  • Glaser AK,Bishop KW,Barner LA,Susaki EA,Kubota SI,Gao G,Serafin RB,Balaram P,Turschak E,Nicovich PR,Lai H,Lucas LAG,Yi Y,Nichols EK,Huang H,Reder NP,Wilson JJ,Sivakumar R,Shamskhou E,Stoltzfus CR,Wei X,Hempton AK,Pende M,Murawala P,Dodt HU,Imaizumi T,Shendure J,Beliveau BJ,Gerner MY,Xin L,Zhao H,True LD,Reid RC,Chandrashekar J,Ueda HR,Svoboda K,Liu JTC , A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues , Nat. Methods , 2022

  • Chino H,Yamasaki A,Ode KL,Ueda HR,Noda NN,Mizushima N , Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins , EMBO Rep. , 2022

  • Nojima S,Ishida S,Terayama K,Matsumoto K,Matsui T,Tahara S,Ohshima K,Kiyokawa H,Kido K,Ukon K,Yoshida SY,Mitani TT,Doki Y,Mizushima T,Okuno Y,Susaki EA,Ueda HR,Morii E , A novel three-dimensional imaging system based on polysaccharide staining for accurate histopathological diagnosis of inflammatory bowel diseases , Cell. Mol. Gastroenterol. Hepatol. , 2022

  • Takahashi K,Abe K,Kubota SI,Fukatsu N,Morishita Y,Yoshimatsu Y,Hirakawa S,Kubota Y,Watabe T,Ehata S,Ueda HR,Shimamura T,Miyazono K , An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis , Nat. Commun. , 2022

  • Tone D,Ode KL,Zhang Q,Fujishima H,Yamada RG,Nagashima Y,Matsumoto K,Wen Z,Yoshida SY,Mitani TT,Arisato Y,Ohno RI,Ukai-Tadenuma M,Yoshida Garﾃｧon J,Kaneko M,Shi S,Ukai H,Miyamichi K,Okada T,Sumiyama K,Kiyonari H,Ueda HR , Distinct phosphorylation states of mammalian CaMKIIﾎｲ control the induction and maintenance of sleep , PLoS Biol. , 2022

  • Sakamaki JI,Ode KL,Kurikawa Y,Ueda HR,Yamamoto H,Mizushima N , Ubiquitination of phosphatidylethanolamine in organellar membranes , Mol. Cell , 2022

  • Wang Y,Minami Y,Ode KL,Ueda HR , The role of calcium and CaMKII in sleep , Front. Syst. Neurosci. , 2022

  • Dean B,Bakker G,Ueda HR,Tobin AB,Brown A,Kanaan RAA , A growing understanding of the role of muscarinic receptors in the molecular pathology and treatment of schizophrenia , Front. Cell. Neurosci. , 2023

  • Noji H,Ueno H , How does F1-ATPase generate torque?: Analysis from cryo-electron microscopy and rotational catalysis of thermophilic F1 , Front. Microbiol. , 2022

  • Itoh Y,Chen S,Hirahara R,Konda T,Aoki T,Ueda T,Shimada I,Cannon JJ,Shao C,Shiomi J,Tabata KV,Noji H,Sato K,Aida T , Ultrafast water permeation through nanochannels with a densely fluorous interior surface , Science , 2022

  • Yaginuma H,Ohtake K,Akamatsu T,Noji H,Tabata KV , A microreactor sealing method using adhesive tape for digital bioassays , Lab Chip , 2022

  • Mendoza-Hoffmann F,Zarco-Zavala M,Ortega R,Celis-Sandoval H,Torres-Larios A,José J. García-Trejo , Evolution of the inhibitory and non-inhibitory ε, ζ, and IF1 subunits of the F1FO-ATPase as related to the endosymbiotic origin of mitochondria , Microorganisms , 2022

  • Sato K,Sasaki R,Matsuda R,Nakagawa M,Ekimoto T,Yamane T,Ikeguchi M,Tabata KV,Noji H,Kinbara K , Supramolecular mechanosensitive potassium channel formed by fluorinated amphiphilic cyclophane , J. Am. Chem. Soc. , 2022

  • Noji H,Minagawa Y,Ueno H , Enzyme-based digital bioassay technology - key strategies and future perspectives , Lab Chip , 2022

  • Miyazaki M,Kosugi T , Uncovering the design principles of supramolecular assemblies through manipulation of the structures, dynamics, and functions , Biophys. Physicobiol. , 2022

  • Wong CF,Saw WG,Basak S,Sano M,Ueno H,Kerk HW,Litty D,Ragunathan P,Dick T,Mﾃｼller V,Noji H,Grﾃｼber G , Structural elements involved in ATP hydrolysis inhibition and ATP synthesis of tuberculosis and nontuberculous Mycobacterial F-ATP synthase decipher new targets for inhibitors , Antimicrob. Agents Chemother. , 2022

  • Minagawa Y,Nakata S,Date M,Ii Y,Noji H , On-chip enrichment system for digital bioassay based on aqueous two-phase system , ACS Nano , 2023

  • Sakuma M,Honda S,Ueno H,Tabata KV,Miyazaki K,Tokuriki N,Noji H , Genetic perturbation alters functional substates in alkaline phosphatase , J. Am. Chem. Soc. , 2023

  • Ono T,Tabata K,Noji H,Morimoto J,Sando S , Each side chain of cyclosporin A is not essential for high passive permeability across lipid bilayers , RSC Adv. , 2023

  • Godoy-Hernandez A,Asseri AH,Purugganan AJ,Jiko C,de Ram C,Lill H,Pabst M,Mitsuoka K,Gerle C,Bald D,McMillan DGG , Rapid and highly stable membrane reconstitution by LAiR enables the study of physiological integral membrane protein functions , ACS Cent. Sci. , 2023

  • Kobayashi R,Ueno H,Okazaki KI,Noji H , Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase , Nat. Commun. , 2023

  • Nakaishi K,Hukushima K , Absence of phase transition in random language model , Phys. Rev. Res. , 2022

  • Ichikawa Y,Hukushima K , Statistical-mechanical study of deep Boltzmann machine given weight parameters after training by singular value decomposition , J. Phys. Soc. Jpn. , 2022

  • Nagano Y,Hukushima K , Phase transition in compressed sensing with horseshoe prior , Phys. Rev. E. , 2023

  • Nishikawa Y,Ozawa M,Ikeda A,Chaudhuri P,Berthier L , Relaxation dynamics in the energy landscape of glass-forming liquids , Phys. Rev. X. , 2022

  • Nishikawa Y,Ikeda A,Berthier L , Collective dynamics in a glass-former with Mari–Kurchan interactions , J. Chem. Phys. , 2022

  • Shiraishi K,Mizuno H,Ikeda A , Non-phononic density of states of two-dimensional glasses revealed by random pinning , J. Chem. Phys. , 2023

  • Yoshimura K,Kolchinsky A,Dechant A,Ito S , Geometrical approach to excess/housekeeping entropy production in discrete systems , arXiv e-prints , 2022

  • Yoshida S,Okada Y,Muneyuki E,Ito S , Thermodynamic role of main reaction pathway and multi-body information flow in membrane transport , Phys. Rev. Res. , 2022

  • Kolchinsky A,Dechant A,Yoshimura K,Ito S , Information geometry of excess and housekeeping entropy production , Preprint , 2022

  • Dechant A,Sasa SI,Ito S , Geometric decomposition of entropy production into excess, housekeeping, and coupling parts , Physical Review E , 2022

  • Ohga N,Ito S , Information-geometric structure for chemical thermodynamics: An explicit construction of dual affine coordinates , Phys. Rev. E. , 2022

  • Yoshimura K,Kolchinsky A,Dechant A,Ito S , Housekeeping and excess entropy production for general nonlinear dynamics , Phys. Rev. Res. , 2023

  • Matsushita Y,Hatakeyama TS,Kaneko K , Dynamical systems theory of cellular reprogramming , Phys. Rev. Res. , 2022

  • Sugawara T,Kaneko K , Chemophoresis engine: A general mechanism of ATPase-driven cargo transport , PLoS Comput. Biol. , 2022

  • Tang QY,Ren W,Wang J,Kaneko K , The statistical trends of protein evolution: A lesson from AlphaFold database , Mol. Biol. Evol. , 2022

  • Oda AH,Tamura M,Kaneko K,Ohta K,Hatakeyama TS , Autotoxin-mediated latecomer killing in yeast communities , PLoS Biol , 2022

  • Ogita G,Kondo T,Ikawa K,Uemura T,Ishihara S,Sugimura K , Image-based parameter inference for epithelial mechanics , PLoS Comput. Biol. , 2022

  • Kuromiya K,Aoki K,Ishibashi K,Yotabun M,Sekai M,Tanimura N,Iijima S,Ishikawa S,Kamasaki T,Akieda Y,Ishitani T,Hayashi T,Toda S,Yokoyama K,Lee CG,Usami I,Inoue H,Takigawa I,Gauquelin E,Sugimura K,Hino N,Fujita Y , Calcium sparks enhance the tissue fluidity within epithelial layers and promote apical extrusion of transformed cells , Cell Rep. , 2022

  • Ikawa K,Ishihara S,Tamori Y,Sugimura K , Attachment and detachment of cortical myosin regulates cell junction exchange during cell rearrangement in the Drosophila wing epithelium , Curr. Biol. , 2023

  • Utami YD,Hiruma K , Genome Resource of Colletotrichum spaethianum, the Causal Agent of Leaf Anthracnose in Polygonatum falcatum , PhytoFront. , 2022

  • Utami YD,Nguyen TAN,Hiruma K , Investigating plant-microbe interactions within the root , Arch. Microbiol. , 2022

  • Mukai M,Hiruma K,Nishigaki T,Utami YD,Otaka J,Yoshihashi T,Sarr PS,Oo AZ,Takai T,Tujimoto Y , Dysbiosis of the rhizosphere microbiome caused by γ-irradiation alters the composition of root exudates and reduces phosphorus uptake by rice in flooded soils , Plant Soil , 2022

  • Hirai H,Takemata N,Tamura M,Ohta K , Facultative heterochromatin formation in rDNA is essential for cell survival during nutritional starvation , Nucleic Acids Res. , 2022

  • Hirata Y,Oda AH,Motono C,Shiro M,Ohta K , Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts , Sci. Rep. , 2022

  • Yone H,Kono H,Hirai H,Ohta K , Gene mapping methodology powered by induced genome rearrangements , Sci. Rep. , 2022

  • Kawashima Y,Oda AH,Hikida Y,Ohta K , Chromosome-dependent aneuploid formation in Spo11-less meiosis , Genes Cells , 2023

  • Hirai H,Ohta K , Comparative Research: Regulatory Mechanisms of Ribosomal Gene Transcription in Saccharomyces cerevisiae and Schizosaccharomyces pombe , Biomolecules , 2023

  • Kamiya S,Kawakita G,Sasai S,Kitazono J,Oizumi M , Optimal control costs of brain state transitions in linear stochastic systems , Society for Neuroscience , 2023

  • Kitazono J,Aoki Y,Oizumi M , Bidirectionally connected cores in a mouse connectome: towards extracting the brain subnetworks essential for consciousness , Cereb. Cortex , 2023

  • Shimamoto D,Yanagisawa M , Universal properties and classification of randomly-packed particles with power size distribution , arXiv e-prints , 2022

  • Tanaka A,Nakano T,Watanabe K,Masuda K,Honda G,Kamata S,Yasui R,Kozuka-Hata H,Watanabe C,Chinen T,Kitagawa D,Sawai S,Oyama M,Yanagisawa M,Kunieda T , Stress-dependent cell stiffening by tardigrade tolerance proteins that reversibly form a filamentous network and gel , PLoS Biol. , 2022

  • Watanabe C,Furuki T,Kanakubo Y,Kanie F,Koyanagi K,Takeshita J,Yanagisawa M , Cell-sized confinement initiates phase separation of polymer blends and promotes fractionation upon competitive membrane wetting , ACS Mater. Lett. , 2022

  • Yanagisawa M , Cell-size space effects on phase separation of binary polymer blends , Biophys. Rev. , 2022

  • Yanagisawa M,Watanabe C,Yoshinaga N,Fujiwara K , Cell-size space regulates the behavior of confined polymers: From nano- and micromaterials science to biology , Langmuir , 2022

  • Nikoubashman A,Yanagisawa M , Confinement-induced fractionation and liquid-liquid phase separation of polymer mixtures , Polymers (Basel) , 2023

  • Shimamoto DS,Yanagisawa M , Common packing patterns for jammed particles of different power size distributions , Phys. Rev. Res. , 2023

  • Koganezawa Y,Umetani M,Sato M,Wakamoto Y , History-dependent physiological adaptation to lethal genetic modification under antibiotic exposure , Elife , 2022

  • Kuwasaki Y,Suzuki K,Yu G,Yamamoto S,Otabe T,Kakihara Y,Nishiwaki M,Miyake K,Fushimi K,Bekdash R,Shimizu Y,Narikawa R,Nakajima T,Yazawa M,Sato M , A red light-responsive photoswitch for deep tissue optogenetics , Nat. Biotechnol. , 2022

  • Yamaguchi S,Okada A,Sunaga S,Kurakawa KI,Yamauchi T,Nangaku M,Kadowaki T , Impact of COVID-19 pandemic on healthcare service use for non-COVID-19 patients in Japan: retrospective cohort study , BMJ Open , 2022

  • Sakashita M,Nangaku M , Multi-omics studies reveal genes critical for AKI and ferroptosis , Kidney Int. , 2022

  • Oki R,Hamasaki Y,Komaru Y,Miyamoto Y,Matsuura R,Akari S,Nakamura T,Murase T,Doi K,Nangaku M , Plasma xanthine oxidoreductase is associated with carotid atherosclerosis in stable kidney transplant recipients , Nephrology (Carlton) , 2022

  • Matsuoka S,Kaneko H,Okada A,Fukui A,Yano Y,Itoh H,Morita K,Fujiu K,Michihata N,Jo T,Takeda N,Morita H,Yamaguchi S,Nakamura S,Nishiyama A,Yokoo T,Node K,Yamauchi T,Nangaku M,Yasunaga H,Komuro I , Association between proteinuria and incident colorectal cancer: analysis of a nationwide population-based database , BMJ Open , 2022

  • Miyamoto Y,Iwagami M,Aso S,Uda K,Fushimi K,Hamasaki Y,Nangaku M,Yasunaga H,Doi K , Postoperative outcomes of cancer surgery in patients with and without kidney failure with dialysis therapy: a matched-pair cohort study , Clin. Kidney J. , 2022

  • Okada A,Hashimoto Y,Goto T,Yamaguchi S,Ono S,Ikeda Kurakawa K,Nangaku M,Yamauchi T,Yasunaga H,Kadowaki T , A machine learning-based predictive model to identify patients who failed to attend a follow-up visit for diabetes care after recommendations from a national screening program , Diabetes Care , 2022

  • Kurata Y,Tanaka T,Cernecka H,Eitner F,et al. , TRPM2 plays a minor role in AKI and kidney fibrosis , Kidney360 , 2022

  • Suzuki Y,Kaneko H,Okada A,Itoh H,Fujiu K,Michihata N,K , Impact of glucose tolerance and its change on incident proteinuria: analysis of a nationwide population-based dataset , American Journal of Nephrology , 2022

  • Nakai K,Manaka K,Sato J,Takeuchi M,Yamazaki Y,Sasano H,M , Aldosterone-producing adenomas of increased size are associated with higher steroidogenic activity , The Journal of Clinical Endocrinology & Metabolism , 2022

  • Hasegawa S,Nangaku M , Anti-aging mechanism of calorie restriction in humans , Kidney Int. , 2022

  • Kurakawa KI,Okada A,Bessho K,Jo T,Ono S,Michihata N,Kumazawa R,Matsui H,Fushimi K,Yamaguchi S,Yamauchi T,Nangaku M,Kadowaki T,Yasunaga H , Major complications after percutaneous biopsy of native or transplanted liver in pediatric patients: a nationwide inpatient database study in Japan , BMC Gastroenterol. , 2022

  • Inoue T,Nakamura Y,Tanaka S,Kohro T,Li LX,Huang L,Yao J,Kawamura S,Inoue R,Nishi H,Fukaya D,Uni R,Hasegawa S,Inagi R,Umene R,Wu CH,Ye H,Bajwa A,Rosin DL,Ishihara K,Nangaku M,Wada Y,Okusa MD , Bone marrow stromal cell antigen-1 (CD157) regulated by sphingosine kinase 2 mediates kidney fibrosis , Front. Med. (Lausanne) , 2022

  • Oki R,Hamasaki Y,Tsuji S,Suzuki K,Tsuneishi S,Imafuku M,Komaru Y,Miyamoto Y,Matsuura R,Doi K,Nangaku M , Clinical frailty assessment might be associated with mortality in incident dialysis patients , Sci. Rep. , 2022

  • Kato H,Koga M,Kinoshita Y,Hidaka N,Hoshino Y,Takashi Y,Arai M,Kobayashi H,Katsura M,Nakamoto Y,Makise N,Ushiku T,Hoshi K,Nangaku M,Makita N,Fukumoto S,Ito N , Utility of multimodality approach including systemic FGF23 venous sampling in localizing phosphaturic mesenchymal tumors , J. Endocr. Soc. , 2022

  • Doi K,Kimura H,Kim SH,Kaneda S,Wada T,Tanaka T,Shimizu A,Sano T,Chikamori M,Shinohara M,Matsunaga Y,Nangaku M,Fujii T , Enhanced podocyte differentiation and changing drug toxicity sensitivity through pressure-controlled mechanical filtration stress on a glomerulus-on-a-chip , Lab Chip , 2022

  • Kaneko H,Yano Y,Okada A,Itoh H,Suzuki Y,Yokota I,Morita K,Fujiu K,Michihata N,Jo T,Yamaguchi S,Takeda N,Morita H,Node K,Yamauchi T,Nangaku M,Kadowaki T,McEvoy JW,Lam CSP,Yasunaga H,Komuro I , Age-dependent association between modifiable risk factors and incident cardiovascular disease , J. Am. Heart Assoc. , 2023

  • Okada A,Ikeda Kurakawa K,Harita Y,Shimizu A,Yamaguchi S,Aso S,Ono S,Hashimoto Y,Kumazawa R,Michihata N,Jo T,Matsui H,Fushimi K,Nangaku M,Yamauchi T,Yasunaga H,Kadowaki T , Comparison of bleeding complications after pediatric kidney biopsy between intravenous sedation and general anesthesia: a nationwide cohort study , BMC Pediatr. , 2023

  • Kikuchi K,Nangaku M,Ryuzaki M,Yamakawa T,Yoshihiro O,Hanafusa N,Sakai K,Kanno Y,Ando R,Shinoda T,Wakino S,Nakamoto H,Takemoto Y,Akizawa T,COVID-19 Task Force Committee of the Japanese Association of Dialysis Physicians, the Japanese Society for Dialysis Therapy, and the Japanese Society of Nephrology , Effectiveness of SARS-CoV-2 vaccines on hemodialysis patients in Japan: A nationwide cohort study , Ther. Apher. Dial. , 2023

  • Okada A,Yamada G,Kimura T,Hagiwara Y,Yamaguchi S,Kurakawa KI,Nangaku M,Yamauchi T,Matsuyama Y,Kadowaki T , Diagnostic ability using fatty liver and metabolic markers for metabolic-associated fatty liver disease stratified by metabolic/glycemic abnormalities , J. Diabetes Investig. , 2023

  • Furubayashi T,Ichihashi N , How evolution builds up complexity?: In vitro evolution approaches to witness complexification in artificial molecular replication systems , The Biophysical Society of Japan , 2022

  • Miyachi R,Ichihashi N , Toward in vitro reconstitution of self-replicating molecular systems , Journal of Japanese Society for Extremophiles , 2022

  • Miyachi R,Shimizu Y,Ichihashi N , Transfer RNA synthesis-coupled translation and DNA replication in a reconstituted transcription/translation system , ACS Synth. Biol. , 2022

  • Maeda Y,Mizuuchi R,Shigenobu S,Shibai A,Kotani H,Furusawa C,Ichihashi N , Experimental evidence for the correlation between RNA structural fluctuations and the frequency of beneficial mutations , RNA , 2022

  • Kamiura R,Mizuuchi R,Ichihashi N , Plausible pathway for a host-parasite molecular replication network to increase its complexity through Darwinian evolution , PLoS Comput. Biol. , 2022

  • Thomas Meier U , The daunting task of modifying ribosomal RNA , Cold Spring Harbor Lab , 2022

  • Sugii S,Hagino K,Mizuuchi R,Ichihashi N , Cell-free expression of RuBisCO for ATP production in the synthetic cells , Synthetic Biology , 2023

  • Katoh TA,Omori T,Mizuno K,Sai X,Minegishi K,Ikawa Y,Nishimura H,Itabashi T,Kajikawa E,Hiver S,Iwane AH,Ishikawa T,Okada Y,Nishizaka T,Hamada H , Immotile cilia of the mouse node sense a fluid flow-induced mechanical force for left-right symmetry breaking , Preprint , 2022

  • Yoshida S,Okada Y,Muneyuki E,Ito S , Thermodynamic role of main reaction pathway and multi-body information flow in membrane transport , Phys. Rev. Res. , 2022

  • Saji T,Nishita M,Ikeda K,Endo M,Okada Y,Minami Y , c-Src-mediated phosphorylation and activation of kinesin KIF1C promotes elongation of invadopodia in cancer cells , J. Biol. Chem. , 2022

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