Tsugama Laboratory — For Genomics of Plant Resources
植物資源ゲノミクス研究室 (津釜研)   (C) 2019 Daisuke Tsugama

Last update: 01/17/2024

*Corresponding author

  1. Yingwei Qu, Ambika Dudhate, Harshraj Subhash Shinde, Tetsuo Takano, Daisuke Tsugama* "Phylogenetic trees, conserved motifs and predicted subcellular localization for transcription factor families in pearl millet" BMC Res Notes 2023 Mar 20;16(1):38. [Article; PubMed]
  2. Yingwei Qu, Shashi Kumar Gupta, Ambika Dudhate, Harshraj Subhash Shinde, Shenkui Liu, Tetsuo Takano, Daisuke Tsugama* "Analyses of sequence features and expression patterns of DOF transcription factor genes in pearl millet (Pennisetum glaucum (L.) R. Br.)" Tropical Plant Biol 2023 Jun 24; 16: 113-122 [Article]
  3. Bin Yang, Mingming Chen, Chengfang Zhan, Kexin Liu, Yanhao Cheng, Ting Xie, Peiwen Zhu, Ying He, Peng Zeng, Haijuan Tang, Daisuke Tsugama, Sunlu Chen, Hongsheng Zhang, Jinping Cheng "Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via genome-wide association study" J Exp Bot 2022 Jun 2;73(11):3446-3461. [Article; PubMed]
  4. Jiali Li, Chaofeng Li, Momi Tsuruta, Norihisa Matsushita, Susumu Goto, Zhenguo Shen, Daisuke Tsugama, Shijie Zhang, Chunlan Lian "Physiological and transcriptional responses of the ectomycorrhizal fungus Cenococcum geophilum to salt stress" Mycorrhiza 2022 Jul;32(3-4):327-340. [Article; PubMed]
  5. Pei Yu, Harshraj Shinde, Ambika Dudhate, Daisuke Tsugama, Shashi Kumar Gupta, Shenkui Liu, Tetsuo Takano "Genome-wide investigation of SQUAMOSA promoter binding protein-like transcription factor family in pearl millet (Pennisetum glaucum (L) R. Br.)" Plant Gene 2021 Sep;27:100313. [Article]
  6. Hyuk Sung Yoon, Kaien Fujino, Shenkui Liu, Tetsuo Takano, Daisuke Tsugama* "NDR/LATS-family protein kinase genes are indispensable for embryogenesis in Arabidopsis" FEBS Open Bio 2021 Sep;11(9):2600-2606. [Article; PubMed]
  7. Daisuke Tsugama*, Tetsuo Takano "TGIF-DB: terse genomics interface for developing botany" BMC Res Notes 2021 May 13;14(1):181. [Article; PubMed]
  8. Daisuke Tsugama* "TGIF-DB datasets" figshare 2021 May [Article]
  9. Ambika Dudhate, Harshraj Shinde, Pei Yu, Daisuke Tsugama, Shashi Kumar Gupta, Shenkui Liu, Tetsuo Takano "Comprehensive analysis of NAC transcription factor family uncovers drought and salinity stress response in pearl millet (Pennisetum glaucum)" BMC Genomics 2021 Jan 21;22(1):70. [Article; PubMed]
  10. Hyuk Sung Yoon, Kaien Fujino, Shenkui Liu, Tetsuo Takano, Daisuke Tsugama* "The B″-family subunits of protein phosphatase 2A are necessary for in-vitro dephosphorylation of the Arabidopsis mechanosensory transcription factor VIP1" Biochem Biophys Res Commun 2021 Jan 1;534:353-358. [Article; PubMed]
  11. Daisuke Tsugama*, Tetsuo Takano "Developing a tool to shoot genes by a man-made air pressure" J Genet Eng Biotechnol 2020 Sep 11;18(1):48. [Article; PubMed]
  12. Yao Wang, Min Wang, Xiaoxue Ye, Hua Liu, Tetsuo Takano, Daisuke Tsugama, Shenkui Liu, Yuanyuan Bu "Biotin plays an important role in Arabidopsis thaliana seedlings under carbonate stress" Plant Sci 2020 Nov;300:110639. [Article; PubMed]
  13. Yuka Fukuie, Hana Shimoyama, Toshikazu Morishita, Daisuke Tsugama, Kaien Fujino "A putative AGAMOUS ortholog is a candidate for the gene determining ease of dehulling in Tartary buckwheat (Fagopyrum tataricum)" Planta 2020 Mar 20;251(4):85. [Article; PubMed]
  14. Daisuke Tsugama*, Kaien Fujino, Shenkui Liu, Tetsuo Takano "A GDSL-type esterase/lipase gene, GELP77, is necessary for pollen dissociation and fertility in Arabidopsis" Biochem Biophys Res Commun 2020 Jun 11;526(4):1036-1041. [Article; PubMed]
  15. Hyuk Sung Yoon, Kaien Fujino, Shenkui Liu, Tetsuo Takano, Daisuke Tsugama* "VIP1, a bZIP protein, interacts with the catalytic subunit of protein phosphatase 2A in Arabidopsis thaliana" Plant Signal Behav 2020 15(2):1706026. [Article; PubMed]
  16. Daisuke Tsugama*, Kaien Fujino "Data of whole genome sequencing of five garden asparagus (Asparagus officinalis) individuals with the MinION nanopore sequencer" Data Brief 2019 Nov 19;28:104838. [Article; PubMed]
  17. Daisuke Tsugama*, Hyuk Sung Yoon, Kaien Fujino, Shenkui Liu, Tetsuo Takano "Protein phosphatase 2A regulates the nuclear accumulation of the Arabidopsis bZIP protein VIP1 under hypo-osmotic stress" J Exp Bot 2019 Nov 18;70(21):6101-6112. [Article; PubMed]
  18. Harshraj Shinde, Ambika Dudhate, Daisuke Tsugama, Shashi K Gupta, Shenkui Liu, Tetsuo Takano "Pearl millet stress-responsive NAC transcription factor PgNAC21 enhances salinity stress tolerance in Arabidopsis" Plant Physiol Biochem 2019 Feb;135:546-553. [Article; PubMed]
  19. Mayui Ide, Kiyoshi Masuda, Daisuke Tsugama*, Kaien Fujino "Death of female flower microsporocytes progresses independently of meiosis-like process and can be accelerated by specific transcripts in Asparagus officinalis" Sci Rep 2019 Feb 25;9(1):2703. [Article; PubMed]
  20. Harshraj Shinde, Keisuke Tanaka, Ambika Dudhate, Daisuke Tsugama, Yoko Mine, Shenkui Liu, Tetsuo Takano "Comparative de novo transcriptomic profiling of the salinity stress responsiveness in contrasting pearl millet lines" Environ Exp Bot 2018;155:619-627 [Article]
  21. Daisuke Tsugama*, Shenkui Liu, Kaien Fujino, Tetsuo Takano "Possible inhibition of Arabidopsis VIP1-mediated mechanosensory signaling by streptomycin" Plant Signal Behav 2018;13(10):e1521236. [Article; PubMed]
  22. Daisuke Tsugama*, Shenkui Liu, Kaien Fujino, Tetsuo Takano "B-family subunits of protein phosphatase 2A are necessary for pollen development but not for female gametophyte development in Arabidopsis" Biochem Biophys Res Commun 2018 Oct 20;505(1):176-180. [Article; PubMed]
  23. Rachelle Lapham, Lan-Ying Lee, Daisuke Tsugama, Sanghun Lee, Tesfaye Mengiste, Stanton B Gelvin "VIP1 and Its Homologs Are Not Required for Agrobacterium-Mediated Transformation, but Play a Role in Botrytis and Salt Stress Responses" Front Plant Sci 2018 Jun 12;9:749. [Article; PubMed]
  24. Daisuke Tsugama*, Shenkui Liu, Kaien Fujino, Tetsuo Takano "Calcium signalling regulates the functions of the bZIP protein VIP1 in touch responses in Arabidopsis thaliana" Ann Bot 2018 Dec 31;122(7):1219-1229. [Article; PubMed]
  25. Harshraj Shinde, Keisuke Tanaka, Ambika Dudhate, Daisuke Tsugama, Yoko Mine, Takehiro Kamiya, Shashi K. Gupta, Shenkui Liu, Tetsuo Takano "Transcriptomic analysis reveals the differentially expressed genes and pathways involved in drought tolerance in pearl millet [Pennisetum glaucum (L.) R. Br]" PLoS One 2018 Apr 13;13(4):e0195908. [Article; PubMed]
  26. Ryota Mochizuki, Daisuke Tsugama, Michihiro Yamazaki, Kaien Fujino, Kiyoshi Masuda "Identification of candidates for interacting partners of the tail domain of DcNMCP1, a major component of the Daucus carota nuclear lamina-like structure" Nucleus 2017 May 4;8(3):312-322. [Article; PubMed]
  27. Daisuke Tsugama, Kohei Matsuyama, Mayui Ide, Masato Hayashi, Kaien Fujino, Kiyoshi Masuda "A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis" Sci Rep 2017 Feb 8;7:41497. [Article; PubMed]
  28. Daisuke Tsugama*, Shenkui Liu, Tetsuo Takano "The bZIP Protein VIP1 Is Involved in Touch Responses in Arabidopsis Roots" Plant Physiol 2016 Jun;171(2):1355-65. [Article; PubMed]
  29. Daisuke Tsugama*, Shenkui Liu, Tetsuo Takano "VIP1 is very important/interesting protein 1 regulating touch responses of Arabidopsis" Plant Signal Behav 2016 Jun 2;11(6):e1187358. [Article; PubMed]
  30. Jeeraporn Kansup, Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "Arabidopsis G-protein β subunit AGB1 interacts with NPH3 and is involved in phototropism" Biochem Biophys Res Commun 2014 Feb 28;445(1):54-7. [Article; PubMed]
  31. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "Analysis of functions of VIP1 and its close homologs in osmosensory responses of Arabidopsis thaliana" PLoS One 2014 Aug 5;9(8):e103930. [Article; PubMed]
  32. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "A bZIP protein, VIP1, interacts with Arabidopsis heterotrimeric G protein β subunit, AGB1" Plant Physiol Biochem 2013 Oct;71:240-6. [Article; PubMed]
  33. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "Metal-binding ability of VIP1: a bZIP protein in Arabidopsis thaliana" Protein J 2013 Oct;32(7):526-32. [Article; PubMed]
  34. Jeeraporn Kansup, Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "The Arabidopsis adaptor protein AP-3μ interacts with the G-protein β subunit AGB1 and is involved in abscisic acid regulation of germination and post-germination development" J Exp Bot 2013 Dec;64(18):5611-21. [Article; PubMed]
  35. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "Arabidopsis heterotrimeric G protein β subunit, AGB1, regulates brassinosteroid signalling independently of BZR1" J Exp Bot 2013 Aug;64(11):3213-3223. [Article; PubMed]
  36. Shio Kobayashi, Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "A U-Box E3 ubiquitin ligase, PUB20, interacts with the Arabidopsis G-protein β subunit, AGB1" PLoS One 2012;7(11):e49207. [Article; PubMed]
  37. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "Drought-induced activation and rehydration-induced inactivation of MPK6 in Arabidopsis" Biochem Biophys Res Commun 2012 Oct 5;426(4):626-9. [Article; PubMed]
  38. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "A bZIP protein, VIP1, is a regulator of osmosensory signaling in Arabidopsis" Plant Physiol 2012 May;159(1):144-55. [Article; PubMed]
  39. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "A putative myristoylated 2C-type protein phosphatase, PP2C74, interacts with SnRK1 in Arabidopsis" FEBS Lett 2012 Mar 23;586(6):693-8. [Article; PubMed]
  40. Daisuke Tsugama, Hua Liu, Shenkui Liu, Tetsuo Takano "Arabidopsis heterotrimeric G protein β subunit interacts with a plasma membrane 2C-type protein phosphatase, PP2C52" Biochim Biophys Acta 2012 Dec;1823(12):2254-2260. [Article; PubMed]
  41. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "A rapid chemical method for lysing Arabidopsis cells for protein analysis" Plant Methods 2011 Jul 15;7:22. [Article; PubMed]
  42. Daisuke Tsugama, Shenkui Liu, Tetsuo Takano "Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis" Biotechnol Lett 2009 Aug;31(8):1305-10. [Article; PubMed]