Score E
Sequences producing significant alignments: (bits) Value
dbj|AV216920.1|AV216920 AV216920 RIKEN full-length enriched... 32 4.0
dbj|AV209685.1|AV209685 AV209685 RIKEN full-length enriched... 32 5.3
gb|AA242372.1|AA242372 mv29c12.r1 GuayWoodford Beier mouse ... 32 5.3
gb|AW107626.1|AW107626 ul93d03.y1 Sugano mouse kidney mkia ... 32 6.9
gb|AW475351.1|AW475351 un64h04.y1 Sugano mouse kidney mkia ... 31 9.1
Alignments
>dbj|AV216920.1|AV216920 AV216920 RIKEN full-length enriched, ES cells Mus musculus cDNA
clone 2410168L04 3' similar to M75168 Rattus norvegicus
liver nuclear protein p47 mRNA,.
Length = 374
Score = 32.5 bits (72), Expect = 4.0
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = +2
Query: 157 MLHKMYDDEESGYCFARKKDVEQEEEVPEIHVAAPVTTPIPTYSAPPVNYEAPVFNNYY 215
+LH+ EES FA ++D QEE +P P TP+PT S + + +P F N +
Sbjct: 170 LLHRAETVEESRAQFALEEDTGQEETLP----PHPTPTPLPTLSM--LLFASPPFLNLF 328
>dbj|AV209685.1|AV209685 AV209685 RIKEN full-length enriched, adult male testis Mus musculus
cDNA clone 1700120N03 3'.
Length = 271
Score = 32.1 bits (71), Expect = 5.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 190 APVTTPIPTYSAPPVNYEAPVFNNYYSK 217
AP+ P PTYSA +++ ++ NYYS+
Sbjct: 95 APILFPFPTYSATECSHKTGLWKNYYSQ 178
>gb|AA242372.1|AA242372 mv29c12.r1 GuayWoodford Beier mouse kidney day 0 Mus musculus cDNA
clone IMAGE:656470 5'.
Length = 438
Score = 32.1 bits (71), Expect = 5.3
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +2
Query: 216 SKGVSGPSEYIGMSNDCKFIYDNQRSVPASYAQKNEY--TLVNAAQTAAPVINYRQEEQE 273
++G SGP + G + C+ + SV SY + + + + +P +Q+ Q+
Sbjct: 89 TQGASGPED--GQ*SGCQKPGEEAGSVAESYRELGQSYSQRLEPSHVPSPTAPRKQDSQQ 262
Query: 274 EHGGEDITQVPASPAVTSRFRGLIKNAQTPVQATAPIVVERITPVAQN 321
H SPA +S + QTP AP R TP+ Q+
Sbjct: 263 VHRSCPARSYTPSPARSSHLKTPAGGPQTPTSTPAPGSATR-TPLTQD 403
>gb|AW107626.1|AW107626 ul93d03.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:2159621 5'.
Length = 514
Score = 31.7 bits (70), Expect = 6.9
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 268 RQEEQEEHGGEDITQVPASPAVTSRFRGLIKNAQTP-VQATAPIVVERITPVAQNSYGAF 326
R+++++ H + Q+ ASP+ + L N QTP +++API + P A+ S+ ++
Sbjct: 232 REKKEDSHSNDQSPQIRASPSPQPSSQPLQINRQTPESKSSAPIKSIKRPPTAEKSHNSW 411
>gb|AW475351.1|AW475351 un64h04.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:2503447 5' similar to TR:O14837 O14837
NEPHROCYSTIN ;.
Length = 508
Score = 31.3 bits (69), Expect = 9.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 249 KNEYTLVNAAQTAAPVINYRQEEQEEH 275
KN +N A AAPV NY Q ++EEH
Sbjct: 196 KNTLQKLNKADEAAPVGNYEQRKEEEH 276
Database: GenBank Mouse EST entries
Posted date: Jul 9, 2000 8:11 PM
Number of letters in database: 441,526,214
Number of sequences in database: 1,284,374
Lambda K H
0.311 0.129 0.369
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121176539
Number of Sequences: 1284374
Number of extensions: 1218639
Number of successful extensions: 4653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4651
Number of HSP's gapped (non-prelim): 5
length of query: 353
length of database: 147,175,404
effective HSP length: 58
effective length of query: 295
effective length of database: 72,681,712
effective search space: 21441105040
effective search space used: 21441105040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 69 (31.3 bits)
