Score E
Sequences producing significant alignments: (bits) Value
gb|AW146408.1|AW146408 um57b03.x1 Sugano mouse liver mlia M... 231 5e-60
gb|AW227061.1|AW227061 um63h08.y1 Sugano mouse kidney mkia ... 211 6e-54
gb|AA987004.1|AA987004 uc81b04.y1 Sugano mouse kidney mkia ... 158 7e-38
gb|AA162674.1|AA162674 mn41e07.r1 Beddington mouse embryoni... 155 5e-37
gb|AW106473.1|AW106473 um28d08.y1 Sugano mouse embryo mewa ... 152 3e-36
gb|AA500707.1|AA500707 vf96b04.r1 Soares_mammary_gland_NbMM... 150 1e-35
gb|AA000062.1|AA000062 mg27e10.r1 Soares mouse embryo NbME1... 148 8e-35
gb|AA710850.1|AA710850 vt52d08.r1 Barstead mouse irradiated... 146 2e-34
gb|AW106630.1|AW106630 um31e11.y1 Sugano mouse kidney mkia ... 144 1e-33
gb|AW044745.1|AW044745 um14a10.y1 Sugano mouse kidney mkia ... 144 1e-33
gb|AA986086.1|AA986086 uc81e05.x1 Sugano mouse kidney mkia ... 143 2e-33
gb|AA672538.1|AA672538 vo60a08.r1 Soares_mammary_gland_NbMM... 142 4e-33
gb|AA445832.1|AA445832 vf11e09.r1 Knowles Solter mouse blas... 141 6e-33
gb|AA870171.1|AA870171 vq12f10.r1 Barstead stromal cell lin... 141 6e-33
dbj|AU080415.1|AU080415 AU080415 Sugano mouse brain mncb Mu... 139 4e-32
gb|AW611001.1|AW611001 un75c05.y1 Sugano mouse kidney mkia ... 138 7e-32
gb|AW557557.1|AW557557 L0283D06-3 Mouse Newborn Ovary cDNA ... 138 9e-32
gb|AA840573.1|AA840573 vw77g09.r1 Stratagene mouse heart (#... 138 9e-32
gb|AA986569.1|AA986569 uc81e04.y1 Sugano mouse kidney mkia ... 109 2e-31
gb|AA896545.1|AA896545 vx63g02.r1 Stratagene mouse macropha... 136 2e-31
gb|AW538002.1|AW538002 C0102A02-3 Mouse E7.5 Extraembryonic... 134 8e-31
gb|AA259649.1|AA259649 va52e01.r1 Soares mouse 3NME12 5 Mus... 134 8e-31
gb|AA237302.1|AA237302 mw96g10.r1 Soares mouse NML Mus musc... 134 1e-30
gb|AA589483.1|AA589483 vl48a08.s1 Stratagene mouse skin (#9... 134 1e-30
gb|AW611007.1|AW611007 un75c12.y1 Sugano mouse kidney mkia ... 134 1e-30
gb|AW543322.1|AW543322 C0168D08-3 Mouse E7.5 Extraembryonic... 132 4e-30
gb|AA259760.1|AA259760 va36b08.r1 Soares mouse 3NME12 5 Mus... 131 7e-30
gb|AW542938.1|AW542938 C0163G02-3 Mouse E7.5 Extraembryonic... 131 1e-29
gb|AI956267.1|AI956267 ul73b05.y1 Sugano mouse kidney mkia ... 131 1e-29
gb|AA619982.1|AA619982 vl76a06.r1 Knowles Solter mouse blas... 131 1e-29
gb|AA104299.1|AA104299 mp02d09.r1 Stratagene mouse heart (#... 128 6e-29
gb|AA399916.1|AA399916 vd70h10.r1 Beddington mouse embryoni... 127 1e-28
gb|AW210061.1|AW210061 ul50e01.y1 Rashbass mouse MOV 9 5 op... 126 2e-28
gb|AI876907.1|AI876907 uj34g03.y1 Sugano mouse kidney mkia ... 125 5e-28
gb|AI573834.1|AI573834 uj66d06.y1 Sugano mouse liver mlia M... 125 5e-28
gb|AA823957.1|AA823957 vq93d08.r1 Knowles Solter mouse blas... 125 5e-28
gb|AW047220.1|AW047220 UI-M-BH1-amb-e-04-0-UI.s1 NIH_BMAP_M... 125 7e-28
gb|AW548984.1|AW548984 L0045G03-3 Mouse E12.5 Female Mesone... 124 1e-27
gb|AW539470.1|AW539470 C0120C03-3 Mouse E7.5 Extraembryonic... 124 1e-27
gb|AI786932.1|AI786932 uj33h05.y1 Sugano mouse kidney mkia ... 124 1e-27
gb|AI317081.1|AI317081 uk72c05.y1 Schiller mouse AtT20 Mus ... 123 2e-27
gb|AA230439.1|AA230439 mw04b10.r1 Soares mouse 3NME12 5 Mus... 113 3e-27
gb|AW743991.1|AW743991 ur26d06.y1 Soares_mouse_NMBP Mus mus... 122 4e-27
gb|BE227132.1|BE227132 us77b12.y1 NCI_CGAP_Mam4 Mus musculu... 121 8e-27
gb|AA726155.1|AA726155 vu88f05.r1 Stratagene mouse skin (#9... 121 8e-27
dbj|AU067462.1|AU067462 AU067462 Sugano mouse brain mncb Mu... 120 2e-26
gb|AI316549.1|AI316549 uj98c07.y1 Schiller mouse MAC13 Mus ... 120 2e-26
gb|AA791735.1|AA791735 vu08b08.r1 Barstead mouse myotubes M... 119 3e-26
gb|BE226462.1|BE226462 ia21b01.y1 Mouse E10 5 12 5 Pancreas... 119 3e-26
gb|AA008997.1|AA008997 mh03d11.r1 Soares mouse embryo NbME1... 119 4e-26
Alignments
>gb|AW146408.1|AW146408 um57b03.x1 Sugano mouse liver mlia Mus musculus cDNA clone
IMAGE:2270093 3' similar to gb:D17532 PUTATIVE
ATP-DEPENDENT RNA HELICASE P54 (HUMAN);.
Length = 740
Score = 231 bits (584), Expect = 5e-60
Identities = 108/149 (72%), Positives = 127/149 (84%)
Frame = -3
Query: 279 QINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSD 338
+I QSI+FCNS+QRVELLAKKI+++GYSC+YIH+KM Q HR+RVFHDFR G CRNLVC+D
Sbjct: 732 KITQSIMFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRHRVFHDFRNGLCRNLVCTD 553
Query: 339 LLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQE 398
L TRGIDIQAVNVVINFDFP+ AETYLHRIGRSGRFGHLG+AINLITY+DR L+ IE++
Sbjct: 552 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 373
Query: 399 LRTRIEPIPKTVDPKLYVADQQLVDAADE 427
L T I+PIP +D LYVA+ A DE
Sbjct: 372 LGTEIKPIPSNIDKSLYVAEYHSEPAEDE 286
>gb|AW227061.1|AW227061 um63h08.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:2286111 5' similar to gb:D17532 PUTATIVE
ATP-DEPENDENT RNA HELICASE P54 (HUMAN);.
Length = 502
Score = 211 bits (532), Expect = 6e-54
Identities = 104/149 (69%), Positives = 124/149 (82%), Gaps = 1/149 (0%)
Frame = +3
Query: 17 ENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGV 76
++WK L LP KD R KT+DVT TKG EFED+CL R+LLMGIFE GWEKPSPIQE SI +
Sbjct: 51 DDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI 230
Query: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
AL+G+DILARAKNGTGK+GAY IP++E++ IQAMVIVPTRELALQ SQIC+++SK
Sbjct: 231 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 410
Query: 137 HI-QLKVMVTTGGTDLRDDIMRLNGTVHL 164
H+ KVM TTGGT+LRDDIMRL+ TVH+
Sbjct: 411 HMGGAKVMATTGGTNLRDDIMRLDDTVHV 497
>gb|AA987004.1|AA987004 uc81b04.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:1432015 5' similar to gb:X03039_cds1 Mouse mRNA
for initiation factor eIF-4AI (MOUSE);.
Length = 801
Score = 158 bits (395), Expect = 7e-38
Identities = 83/223 (37%), Positives = 133/223 (59%), Gaps = 2/223 (0%)
Frame = +1
Query: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
F+D L LL GI+ G+EKPS IQ+ +I + G D++A+A++GTGKT + I ++++
Sbjct: 115 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 294
Query: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN-GTVH 163
I+ LKA QA+V+ PTRELA Q ++ + L ++ GGT++R ++ +L H
Sbjct: 295 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 474
Query: 164 LVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYS 223
+++ TPGR+ D++ + + K VLDEAD++LS+ F+ + + L QV+L S
Sbjct: 475 IIVGTPGRVFDMLNRRYLSPXYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 654
Query: 224 ATFPNTVTSFMQKHMHKPYEINL-MEELTLLGVTQYYAFVQEK 265
AT P+ V +K M P I + EELTL G+ +Y + EK
Sbjct: 655 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRHFYIMLDEK 783
>gb|AA162674.1|AA162674 mn41e07.r1 Beddington mouse embryonic region Mus musculus cDNA
clone IMAGE:540516 5' similar to gb:X03039_cds1 Mouse
mRNA for initiation factor eIF-4AI (MOUSE);.
Length = 637
Score = 155 bits (388), Expect = 5e-37
Identities = 87/204 (42%), Positives = 124/204 (60%), Gaps = 2/204 (0%)
Frame = +1
Query: 213 LPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLM-EELTLLGVTQYYAFVQ-EKQKVHC 270
L QV+L SAT P+ V +K M P I + EELTL G+ Q+Y V+ E+ K+
Sbjct: 22 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT 201
Query: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGN 330
L L+ L I Q++IF N+ ++V+ L +K+ ++ +H M Q R+ + +FR G+
Sbjct: 202 LCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 381
Query: 331 CRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRH 390
R L+ +DLL RGID+Q V++VI++D P N E Y+HRIGR G F GVAIN++T ED+
Sbjct: 382 SRVLITTDLLARGIDVQQVSLVIHYDLPTNRENYIHRIGRGGPFWSKGVAINMVTREDQR 561
Query: 391 TLRRIEQELRTRIEPIPKTVDPKL 414
TLR IE L T IE P+ P L
Sbjct: 562 TLRDIETFLHTSIERCPQRC*PHL 633
>gb|AW106473.1|AW106473 um28d08.y1 Sugano mouse embryo mewa Mus musculus cDNA clone
IMAGE:2225871 5' similar to gb:D13748 EUKARYOTIC
INITIATION FACTOR 4A-I (HUMAN); gb:X03039_cds1 Mouse
mRNA for initiation factor eIF-4AI (MOUSE);.
Length = 818
Score = 152 bits (381), Expect = 3e-36
Identities = 85/248 (34%), Positives = 144/248 (57%), Gaps = 3/248 (1%)
Frame = +3
Query: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
F+D L LL GI+ G+EKPS IQ+ +I + G D++A+A++GTGKT + I ++++
Sbjct: 18 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 197
Query: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN-GTVH 163
I+ LKA QA+V+ PTRE A Q + + + L ++ GT++R ++ +L H
Sbjct: 198 IELDLKATQALVLAPTREFAHQITTVVMALGDYMGASCHACIEGTNVRAEVQKLQMEAPH 377
Query: 164 LVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYS 223
+++ TPGR+ D++ + ++ K VLDEAD++LS+ F+ + + L QV+L S
Sbjct: 378 IIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSHTQVVLLS 557
Query: 224 ATFPNTVTSFMQKHMHKPYEINLM-EELTLLGVTQYYAFV-QEKQKVHCLNTLFRKLQIN 281
AT P+ V +K+M P I + +ELTL G+ Y V +++ ++ L L L I
Sbjct: 558 ATMPSDVLEVTKKYMRDPIRILVKNDELTLDGILHIYMNVGRDEWQLDTLCDLIETLTIT 737
Query: 282 QSIIFCNS 289
++I N+
Sbjct: 738 HAVIVINT 761
>gb|AA500707.1|AA500707 vf96b04.r1 Soares_mammary_gland_NbMMG Mus musculus cDNA clone
IMAGE:851599 5' similar to gb:X03039_cds1 Mouse mRNA for
initiation factor eIF-4AI (MOUSE);.
Length = 555
Score = 150 bits (376), Expect = 1e-35
Identities = 80/180 (44%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Frame = +3
Query: 219 VMLYSATFPNTVTSFMQKHMHKPYEINLM-EELTLLGVTQYYAFVQ-EKQKVHCLNTLFR 276
V+L SAT P+ V +K M P I + EELTL G+ Q+Y V+ E+ K+ L L+
Sbjct: 12 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEPEEWKLDTLCDLYE 191
Query: 277 KLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVC 336
L I Q++IF N+ ++V+ L +K+ ++ +H M Q R+ + +FR G+ R L+
Sbjct: 192 TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 371
Query: 337 SDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIE 396
+DLL R ID+Q V++VIN+D P N E Y+HRIGR GRFG GVAIN++T ED+ TLR IE
Sbjct: 372 TDLLARAIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 551
>gb|AA000062.1|AA000062 mg27e10.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA
clone IMAGE:425034 5' similar to gb:X03039_cds1 Mouse
mRNA for initiation factor eIF-4AI (MOUSE);.
Length = 631
Score = 148 bits (369), Expect = 8e-35
Identities = 79/188 (42%), Positives = 115/188 (61%), Gaps = 2/188 (1%)
Frame = +1
Query: 225 TFPNTVTSFMQKHMHKPYEINLM-EELTLLGVTQYYAFVQ-EKQKVHCLNTLFRKLQINQ 282
T P+ V +K M P I + EELTL G+ Q+Y V+ E+ K+ L L+ L I Q
Sbjct: 1 TMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQ 180
Query: 283 SIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTR 342
++IF N+ ++V+ L +K+ ++ +H M Q R+ + +FR G+ R L+ +DLL R
Sbjct: 181 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 360
Query: 343 GIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTR 402
D+Q V++VIN+D P N E Y+HRIGR GRFG GVAIN++T ED+ LR IE T
Sbjct: 361 ACDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKEALRDIETFYNTS 540
Query: 403 IEPIPKTV 410
IE +P T+
Sbjct: 541 IEEMPLTL 564
>gb|AA710850.1|AA710850 vt52d08.r1 Barstead mouse irradiated colon MPLRB7 Mus musculus cDNA
clone IMAGE:1166703 5' similar to gb:X03039_cds1 Mouse
mRNA for initiation factor eIF-4AI (MOUSE);.
Length = 587
Score = 146 bits (365), Expect = 2e-34
Identities = 74/164 (45%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Frame = +2
Query: 248 EELTLLGVTQYYAFVQ-EKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYS 306
EELTL G+ Q+Y V+ E+ K+ L L+ L I Q++IF N+ ++V+ L +K+ ++
Sbjct: 26 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFT 205
Query: 307 CYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLH 366
+H M Q R+ + +FR G+ R L+ +DLL RG+D+Q V++VIN+D P N E Y+H
Sbjct: 206 VSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGVDVQQVSLVINYDLPTNRENYIH 385
Query: 367 RIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTV 410
RIGR GRFG GVAIN++T ED+ TLR IE T IE +P V
Sbjct: 386 RIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNV 517
>gb|AW106630.1|AW106630 um31e11.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:2236172 5' similar to gb:X03039_cds1 Mouse mRNA
for initiation factor eIF-4AI (MOUSE);.
Length = 916
Score = 144 bits (359), Expect = 1e-33
Identities = 74/201 (36%), Positives = 120/201 (58%), Gaps = 1/201 (0%)
Frame = +2
Query: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
F+D L LL GI+ G+EKPS IQ+ +I + G D++A+A++GTGKT + I ++++
Sbjct: 113 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 292
Query: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN-GTVH 163
I+ LKA QA+V+ PTRELA Q ++ + L ++ GGT++R ++ +L H
Sbjct: 293 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 472
Query: 164 LVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYS 223
+++ TPGR+ D++ + ++ K VLDEAD +LS+ F+ + + L QV+L S
Sbjct: 473 IIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADDMLSRGFKDQIYDIFQKLNSNTQVVLLS 652
Query: 224 ATFPNTVTSFMQKHMHKPYEI 244
AT P+ V +K M P I
Sbjct: 653 ATMPSDVLEVTKKCMRDPIPI 715
>gb|AW044745.1|AW044745 um14a10.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:2192250 5' similar to gb:X03039_cds1 Mouse mRNA
for initiation factor eIF-4AI (MOUSE);.
Length = 871
Score = 144 bits (359), Expect = 1e-33
Identities = 76/209 (36%), Positives = 124/209 (58%), Gaps = 2/209 (0%)
Frame = +1
Query: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
F+D L LL GI+ G+EKPS IQ+ +I + G D++A+A++GTGKT + I ++++
Sbjct: 88 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 267
Query: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLN-GTVH 163
I+ LKA QA+V+ PTRELA Q ++ + L ++ GGT++R ++ +L H
Sbjct: 268 IELDLKATQALVLAPTRELAQQIQKVVMALGDYVGASCHACIGGTNVRAEVQKLQMEAPH 447
Query: 164 LVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYS 223
+++ TPGR+ D++ + ++ K VLDEAD++LS+ F+ + + L QV+ S
Sbjct: 448 IIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVXLS 627
Query: 224 ATFPNTVTSFMQKHMHKPYEINL-MEELT 251
AT P+ V + M P I + EELT
Sbjct: 628 ATMPSDVLEVTKTFMRDPISILVKKEELT 714
Database: GenBank Mouse EST entries
Posted date: Jul 9, 2000 8:11 PM
Number of letters in database: 441,526,214
Number of sequences in database: 1,284,374
Lambda K H
0.322 0.138 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192015975
Number of Sequences: 1284374
Number of extensions: 2224094
Number of successful extensions: 10227
Number of sequences better than 10.0: 884
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 9209
Number of HSP's gapped (non-prelim): 903
length of query: 430
length of database: 147,175,404
effective HSP length: 55
effective length of query: 375
effective length of database: 76,534,834
effective search space: 28700562750
effective search space used: 28700562750
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 70 (31.7 bits)
