Score E
Sequences producing significant alignments: (bits) Value
gb|AI385489.1|AI385489 mj81a01.y1 Soares mouse p3NMF19.5 Mu... 121 9e-27
gb|AA061024.1|AA061024 mj81a01.r1 Soares mouse p3NMF19.5 Mu... 95 7e-19
gb|AI893669.1|AI893669 mj92b07.y1 Soares mouse p3NMF19.5 Mu... 85 6e-16
gb|AI326974.1|AI326974 mj81a01.x1 Soares mouse p3NMF19.5 Mu... 50 8e-12
gb|AA061763.1|AA061763 mj92b07.r1 Soares mouse p3NMF19.5 Mu... 67 2e-10
gb|AI327015.1|AI327015 mj92b07.x1 Soares mouse p3NMF19.5 Mu... 37 0.25
gb|AA273926.1|AA273926 vb99d01.r1 Soares mouse lymph node N... 34 2.2
gb|AA244851.1|AA244851 mx13d10.r1 Soares mouse NML Mus musc... 33 2.9
Alignments
>gb|AI385489.1|AI385489 mj81a01.y1 Soares mouse p3NMF19.5 Mus musculus cDNA clone
IMAGE:482472 5' similar to WP:C56A3.8 CE15739 ;.
Length = 443
Score = 121 bits (300), Expect = 9e-27
Identities = 54/92 (58%), Positives = 70/92 (75%)
Frame = +3
Query: 37 GSSGSYFVYGLEGEIVGVFKPKDEEPFASLNPKWPKFFQRMLCFCCFGRACLIPNTGYLS 96
G+ GSYFV +G IV VFKPK+EEP+ LNPKW K+ Q++ C CCFGR CL+ N GYLS
Sbjct: 6 GTRGSYFVKDSQGRIVAVFKPKNEEPYGHLNPKWTKWLQKLCCPCCFGRDCLVLNQGYLS 185
Query: 97 EAAASIVSEMLQLDVVPTTRIVKLASPSFFYS 128
EA AS+V + L+L++VP T++V LAS +F YS
Sbjct: 186 EAGASLVDQKLELNIVPRTKVVYLASETFNYS 281
>gb|AA061024.1|AA061024 mj81a01.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone
IMAGE:482472 5' similar to SW:YJK0_YEAST P42951
HYPOTHETICAL 70.2 KD PROTEIN IN GSH1-CHS6 INTERGENIC
REGION. ;.
Length = 214
Score = 95.2 bits (233), Expect = 7e-19
Identities = 40/71 (56%), Positives = 53/71 (74%)
Frame = +2
Query: 43 FVYGLEGEIVGVFKPKDEEPFASLNPKWPKFFQRMLCFCCFGRACLIPNTGYLSEAAASI 102
FV +G +V VFKPK EEP+ L+PKW K+ Q++ C CCFGR CL+ N GYLSEA AS+
Sbjct: 2 FVKDSQGRVVAVFKPKSEEPYGRLSPKWTKWLQKLCCPCCFGRDCLVLNQGYLSEAGASL 181
Query: 103 VSEMLQLDVVP 113
V + L+L++VP
Sbjct: 182 VDQKLELNIVP 214
>gb|AI893669.1|AI893669 mj92b07.y1 Soares mouse p3NMF19.5 Mus musculus cDNA clone
IMAGE:483541 5' similar to WP:M03F4.8 CE12370 ;.
Length = 462
Score = 85.4 bits (208), Expect = 6e-16
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 19/158 (12%)
Frame = +1
Query: 185 VDYVIRNTDRHMDNLLVRH----------------VPGEEINLAAIDNGLAFPVRHPECT 228
+DY+IRNTDR DN L+++ V I +AAIDNGLAFP++HP+
Sbjct: 1 LDYIIRNTDRGNDNWLIKYDCPMDNSSCRDTDWVMVREPVIKVAAIDNGLAFPLKHPDSG 180
Query: 229 SRFRSFPFRWSNLPWAQGEFDPVLRRHVLSLLT-PQFVHRLCVDLKKLFRH--GIASSNY 285
R++PF W+ LP A+ F ++ +L ++ P F+ L DL +LF+ G +
Sbjct: 181 ---RAYPFYWAWLPQAKVPFSQEIKDLILPKISDPNFIKDLEEDLYELFKRDPGFDRGQF 351
Query: 286 MLVNSQLRVVRGQIWNLRQAILANESPGEMACRDPIIV 323
+ Q+ V+RGQI L QA+ N+SP + P+IV
Sbjct: 352 ---HKQIAVMRGQILXLTQALKDNKSPLHLVQMPPVIV 456
>gb|AI326974.1|AI326974 mj81a01.x1 Soares mouse p3NMF19.5 Mus musculus cDNA clone
IMAGE:482472 3' similar to SW:YJK0_YEAST P42951
HYPOTHETICAL 70.2 KD PROTEIN IN GSH1-CHS6 INTERGENIC
REGION. ;.
Length = 452
Score = 50.4 bits (118), Expect(2) = 8e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3
Query: 60 EEPFASLNPKWPKFFQRMLCFCCFGRACLIPNTGY 94
EEP+ LNPKW K+ Q++ C CCFGR CL + G+
Sbjct: 450 EEPYGHLNPKWTKWLQKLCCPCCFGRDCLGLHQGF 346
Score = 41.4 bits (95), Expect(2) = 8e-12
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = -2
Query: 93 GYLSEAAASIVSEMLQLDVVPTTRIVKLASPSFFYS 128
G LS+A AS+V + L+L++VP T++V LAS +F YS
Sbjct: 352 GLLSKAGASLVDQKLELNIVPRTKVVYLASETFNYS 245
>gb|AA061763.1|AA061763 mj92b07.r1 Soares mouse p3NMF19.5 Mus musculus cDNA clone
IMAGE:483541 5' similar to SW:YJK0_YEAST P42951
HYPOTHETICAL 70.2 KD PROTEIN IN GSH1-CHS6 INTERGENIC
REGION. ;.
Length = 377
Score = 67.1 bits (161), Expect = 2e-10
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 17/110 (15%)
Frame = +1
Query: 185 VDYVIRNTDRHMDNLLVRH----------------VPGEEINLAAIDNGLAFPVRHPECT 228
+DY+IRNTDR DN L+++ V I +AAIDNGLAFP++HP+
Sbjct: 1 LDYIIRNTDRGNDNWLIKYDCPMDNSSCRDTDWVMVREPVIKVAAIDNGLAFPLKHPDSG 180
Query: 229 SRFRSFPFRWSNLPWAQGEFDPVLRRHVLSLLT-PQFVHRLCVDLKKLFR 277
R++PF W+ LP A+ F ++ +L ++ P F+ L DL +LF+
Sbjct: 181 ---RAYPFYWAWLPQAKVPFSQEIKDLILPKISDPNFIKDLEEDLYELFK 321
>gb|AI327015.1|AI327015 mj92b07.x1 Soares mouse p3NMF19.5 Mus musculus cDNA clone
IMAGE:483541 3' similar to TR:Q23018 Q23018 COSMID
M03F4. ;.
Length = 650
Score = 36.7 bits (83), Expect = 0.25
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = -1
Query: 262 PQFVHRLCVDLKKLFRHGIASSNYMLVNSQLRVVRGQIWNLRQAILANESPGEMACRDPI 321
P F+ L DL +LF+ + Q+ V+RGQI NL QA N+SP + P+
Sbjct: 626 PNFIKDLEEDLYELFKRDPGFDRGQF-HKQIAVMRGQILNLTQAXKDNKSPLHLVQMPPV 450
Query: 322 IV 323
IV
Sbjct: 449 IV 444
>gb|AA273926.1|AA273926 vb99d01.r1 Soares mouse lymph node NbMLN Mus musculus cDNA clone
IMAGE:765121 5'.
Length = 403
Score = 33.6 bits (75), Expect = 2.2
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 289 NSQLRVVRGQIWNLRQAILANESPGEMACRDPIIV 323
+ Q+ V+RGQI NL QA+ N+SP + P+IV
Sbjct: 22 HKQIAVMRGQILNLTQALKDNKSPLHLVQMPPVIV 126
>gb|AA244851.1|AA244851 mx13d10.r1 Soares mouse NML Mus musculus cDNA clone IMAGE:680083
5'.
Length = 473
Score = 33.2 bits (74), Expect = 2.9
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 291 QLRVVRGQIWNLRQAILANESPGEMACRDPIIV 323
Q+ V+RGQI NL QA+ N+SP + P+IV
Sbjct: 6 QIAVMRGQILNLTQALKDNKSPLHLVQMPPVIV 104
Database: GenBank Mouse EST entries
Posted date: Jul 9, 2000 8:11 PM
Number of letters in database: 441,526,214
Number of sequences in database: 1,284,374
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230705055
Number of Sequences: 1284374
Number of extensions: 3481206
Number of successful extensions: 18169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18157
Number of HSP's gapped (non-prelim): 9
length of query: 380
length of database: 147,175,404
effective HSP length: 52
effective length of query: 328
effective length of database: 80,387,956
effective search space: 26367249568
effective search space used: 26367249568
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 70 (31.7 bits)
