Score E
Sequences producing significant alignments: (bits) Value
gb|AW538653.1|AW538653 C0110B12-3 Mouse E7.5 Extraembryonic... 35 1.4
gb|AW553582.1|AW553582 L0229A12-3 Mouse Newborn Ovary cDNA ... 34 4.0
gb|AA537250.1|AA537250 vj97c10.r1 Knowles Solter mouse blas... 33 5.3
gb|AI882023.1|AI882023 ul30d03.y1 Sugano mouse kidney mkia ... 33 6.9
gb|AW545124.1|AW545124 C0188H09-3 Mouse E7.5 Extraembryonic... 32 9.1
Alignments
>gb|AW538653.1|AW538653 C0110B12-3 Mouse E7.5 Extraembryonic Portion cDNA Library Mus
musculus cDNA clone C0110B12 3'.
Length = 457
Score = 35.2 bits (79), Expect = 1.4
Identities = 35/122 (28%), Positives = 48/122 (38%), Gaps = 3/122 (2%)
Frame = +2
Query: 615 TQPVETAVEKKKNDEDEKRHHPLTNFTTASTSSQNLQDQPPPKNTVLRWSNITTPRILRP 674
T+ + +KKKN + K+ P N + Q PPP N + +P
Sbjct: 65 TKNTKKKKKKKKNPQKGKKKTPPKNKRGGGS-----QPPPPPGG-----KNPPPKKKKKP 214
Query: 675 PTLKTPYSLPRTAVIPVMKKKQPEIEQVQ---PKKDTTASLVRKRGRPRKEKPLEVQSPR 731
P K P R A P KKK+P Q PKK T RG+ K+ P + P+
Sbjct: 215 PQKKGPPK--RGAPPPKKKKKKPPKRNPQGGSPKKKTPPQKKPPRGKRYKKNPKKKPPPK 388
Query: 732 KG 733
G
Sbjct: 389 YG 394
>gb|AW553582.1|AW553582 L0229A12-3 Mouse Newborn Ovary cDNA Library Mus musculus cDNA clone
L0229A12 3'.
Length = 293
Score = 33.6 bits (75), Expect = 4.0
Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 5/68 (7%)
Frame = +2
Query: 596 EGSDGPSSSAARPV--GRP---PTTQPVETAVEKKKNDEDEKRHHPLTNFTTASTSSQNL 650
+G G + A RP+ G+P P TQP K+ + + P + A T Q L
Sbjct: 47 QGQRGGGTRAPRPLAGGQPRGGPATQPFRRGGPKETGERPGRSAPPSPSSRRAETGGQLL 226
Query: 651 QDQPPPKN 658
+ PPP+N
Sbjct: 227 GEGPPPRN 250
>gb|AA537250.1|AA537250 vj97c10.r1 Knowles Solter mouse blastocyst B1 Mus musculus cDNA
clone IMAGE:945042 5'.
Length = 561
Score = 33.2 bits (74), Expect = 5.3
Identities = 26/90 (28%), Positives = 40/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 642 TASTSSQNLQDQPPPKNTVLRWSNIT-TPRILRPPTLKTPYSLPRTAVIPVMKKKQPEIE 700
+ TS +NL PPP + L S+ TP+ + P + +PR +P M + PE+
Sbjct: 182 SGDTSRKNLPLPPPPATSPLYSSH*PGTPKFPQGPPAMSDPDVPRGPDVPAMWRLVPEVP 361
Query: 701 QVQPKKDTTASLVRKRGRPRKEKPLEVQSP 730
+ +L R PR E+ E Q P
Sbjct: 362 E---------ALSRSPVPPRPERSPEPQGP 424
>gb|AI882023.1|AI882023 ul30d03.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:2099813 5'.
Length = 521
Score = 32.8 bits (73), Expect = 6.9
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = -1
Query: 390 KKVALEMTKNAVIRQANNFRPKAKNSTVAPKSVQIPAYNHK 430
+ ++LE++ +R+ FRP AK TVA ++Q P HK
Sbjct: 125 ESLSLELSDTFQVRRQRLFRPTAKTVTVAASALQTPVTPHK 3
>gb|AW545124.1|AW545124 C0188H09-3 Mouse E7.5 Extraembryonic Portion cDNA Library Mus
musculus cDNA clone C0188H09 3'.
Length = 440
Score = 32.5 bits (72), Expect = 9.1
Identities = 22/70 (31%), Positives = 29/70 (41%)
Frame = +2
Query: 674 PPTLKTPYSLPRTAVIPVMKKKQPEIEQVQPKKDTTASLVRKRGRPRKEKPLEVQSPRKG 733
PP K P P+T KKK P Q +KRG P+K + Q+P+K
Sbjct: 59 PPPPKRPGGCPQTPGGGPKKKKNPPPGDPQKTPGAPGGNRQKRGGPKKRGGKKPQTPKKN 238
Query: 734 LYLRFKSCTK 743
L+ K K
Sbjct: 239 PILKKKKKKK 268
Database: GenBank Mouse EST entries
Posted date: Jul 9, 2000 8:11 PM
Number of letters in database: 441,526,214
Number of sequences in database: 1,284,374
Lambda K H
0.313 0.128 0.364
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396788698
Number of Sequences: 1284374
Number of extensions: 5618765
Number of successful extensions: 30861
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 30858
Number of HSP's gapped (non-prelim): 8
length of query: 774
length of database: 147,175,404
effective HSP length: 62
effective length of query: 712
effective length of database: 67,544,216
effective search space: 48091481792
effective search space used: 48091481792
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 72 (32.5 bits)
