Score E
Sequences producing significant alignments: (bits) Value
gb|AW321295.1|AW321295 uo29g06.y1 NCI_CGAP_Mam6 Mus musculu... 78 2e-13
gb|AA673690.1|AA673690 vs53g03.r1 Stratagene mouse skin (#9... 74 3e-12
gb|AW319424.1|AW319424 un16c07.y1 Sugano mouse kidney mkia ... 73 6e-12
gb|AW822729.1|AW822729 uq17g09.y1 Ren Stubbs mouse thymus M... 73 8e-12
gb|AA572365.1|AA572365 vl88d10.r1 Stratagene mouse diaphrag... 71 2e-11
gb|AW323457.1|AW323457 uo72e10.y1 NCI_CGAP_Mam1 Mus musculu... 71 2e-11
gb|AW412296.1|AW412296 uq48e12.y1 NCI_CGAP_Mam5 Mus musculu... 71 3e-11
gb|BE226747.1|BE226747 us72d12.y1 NCI_CGAP_Mam4 Mus musculu... 70 5e-11
gb|AI324509.1|AI324509 mr74a03.y1 Stratagene mouse heart (#... 70 5e-11
gb|AA144877.1|AA144877 mr74c03.r1 Stratagene mouse heart (#... 69 1e-10
gb|AW822725.1|AW822725 uq17g02.y1 Ren Stubbs mouse thymus M... 68 2e-10
gb|AI790856.1|AI790856 uk28h01.y1 Sugano mouse kidney mkia ... 68 3e-10
gb|AW822665.1|AW822665 uq14b07.y1 Ren Stubbs mouse thymus M... 66 8e-10
gb|AW907763.1|AW907763 ur93d11.y1 NCI_CGAP_Mam6 Mus musculu... 66 1e-09
gb|W97675.1|W97675 mf98b01.r1 Soares mouse embryo NbME13.5 ... 65 1e-09
gb|AI893038.1|AI893038 mr74c03.y1 Stratagene mouse heart (#... 65 2e-09
gb|AA118618.1|AA118618 mo35c06.r1 Life Tech mouse embryo 13... 64 2e-09
gb|AI153417.1|AI153417 uc53a07.r1 Soares_thymus_2NbMT Mus m... 64 3e-09
gb|AA390061.1|AA390061 mv35d08.r1 GuayWoodford Beier mouse ... 64 3e-09
gb|AA543229.1|AA543229 vk37g01.r1 Soares_mammary_gland_NbMM... 64 4e-09
gb|AA260000.1|AA260000 va87e03.r1 Soares mouse 3NME12 5 Mus... 64 4e-09
gb|AA198886.1|AA198886 mu16g02.r1 Soares_thymus_2NbMT Mus m... 62 9e-09
gb|AA450502.1|AA450502 vf77h05.r1 Soares_mammary_gland_NbMM... 62 1e-08
gb|AI527870.1|AI527870 uj30b06.y1 Sugano mouse kidney mkia ... 61 2e-08
gb|AW985688.1|AW985688 uf84f09.y1 Soares_mammary_gland_NMLM... 61 3e-08
gb|AA967198.1|AA967198 ua50e10.r1 Stratagene mouse lung 937... 61 3e-08
gb|AI664182.1|AI664182 ue82f04.r1 Soares_NMPu Mus musculus ... 61 4e-08
gb|AI324543.1|AI324543 mr86e10.y1 Stratagene mouse heart (#... 60 5e-08
gb|AA517856.1|AA517856 vh82d11.r1 Knowles Solter mouse E6 5... 60 5e-08
gb|AA474977.1|AA474977 vh08e12.r1 Soares_mammary_gland_NbMM... 60 6e-08
gb|AW911167.1|AW911167 ur83a08.y1 NCI_CGAP_Mam6 Mus musculu... 60 6e-08
gb|AW106609.1|AW106609 um31c12.y1 Sugano mouse kidney mkia ... 60 6e-08
gb|AA510978.1|AA510978 vg38a09.r1 Soares_mammary_gland_NbMM... 60 6e-08
gb|AA869728.1|AA869728 vq15b04.r1 Barstead stromal cell lin... 58 2e-07
gb|AA589055.1|AA589055 vk08b03.r1 Knowles Solter mouse blas... 58 2e-07
gb|AA109576.1|AA109576 ml96h03.r1 Stratagene mouse kidney (... 57 3e-07
gb|AA673219.1|AA673219 vn46c10.r1 Barstead mouse myotubes M... 57 5e-07
gb|AA647369.1|AA647369 vp88d08.r1 Stratagene mouse diaphrag... 57 5e-07
gb|AA895700.1|AA895700 vy14c04.r1 Stratagene mouse macropha... 56 9e-07
gb|AI005912.1|AI005912 ua84b12.r1 Soares_mammary_gland_NbMM... 56 9e-07
gb|AA144896.1|AA144896 mr74a03.r1 Stratagene mouse heart (#... 55 1e-06
gb|AA617449.1|AA617449 vj75f11.r1 Knowles Solter mouse blas... 55 2e-06
gb|AW989168.1|AW989168 uf23h03.y1 Soares_mammary_gland_NMLM... 55 2e-06
gb|AA240114.1|AA240114 my22a04.r1 Barstead mouse pooled org... 54 3e-06
gb|AA172898.1|AA172898 ms45d04.r1 Life Tech mouse embryo 13... 54 3e-06
gb|AA762450.1|AA762450 vv83h11.r1 Stratagene mouse skin (#9... 54 3e-06
gb|AA208189.1|AA208189 mv91b04.r1 GuayWoodford Beier mouse ... 53 5e-06
gb|BE137593.1|BE137593 ug65c06.y1 Soares_mammary_gland_NMLM... 53 8e-06
gb|AI324391.1|AI324391 mb50h06.y1 Soares mouse p3NMF19.5 Mu... 53 8e-06
gb|AW682145.1|AW682145 EST00907 E8.5 mouse craniofacial sub... 45 0.001
Alignments
>gb|AW321295.1|AW321295 uo29g06.y1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:2616346 5'
similar to gb:U35368 Mus musculus epsilon tyrosine
phosphatase (MOUSE);.
Length = 604
Score = 78.0 bits (189), Expect = 2e-13
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Frame = +2
Query: 424 FTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGKPLFNEFIMTQAP 483
F + + N+EK R P + D R+ L G D+I+A+ I G N+FI Q P
Sbjct: 86 FELANKEENREKNRYPNILPNDHCRVILSQVDGIPCSDYINASYIDGYKEKNKFIAAQGP 265
Query: 484 MKNTVDDFWRMVWQEEVPYIVMLTSRKE--PERCEYYWP 520
+ TV+DFWRMVW++ IVMLT+ KE E+C YWP
Sbjct: 266 KQETVNDFWRMVWEQRSATIVMLTNLKERKEEKCYQYWP 382
>gb|AA673690.1|AA673690 vs53g03.r1 Stratagene mouse skin (#937313) Mus musculus cDNA clone
IMAGE:1150036 5' similar to gb:Y00815_cds1 LAR PROTEIN
PRECURSOR (HUMAN); gb:X82288 M.musculus mRNA for protein
tyrosine phosphatase (MOUSE);.
Length = 584
Score = 74.1 bits (179), Expect = 3e-12
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Frame = -2
Query: 426 HSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGKPLFNEFIMTQAPMK 485
HS + N+ K R V D +R+ LQ G D+I+AN + G N +I TQ P+
Sbjct: 301 HSNLEANKPKNRYANVIAYDHSRVILQPLEGIMGSDYINANYVDGYRRQNAYIATQGPLP 122
Query: 486 NTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
T DFWRMVW++ +VM+T +E R C+ YWP
Sbjct: 121 ETFGDFWRMVWEQRSATVVMMTRLEEKSRIKCDQYWP 11
>gb|AW319424.1|AW319424 un16c07.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:2395500 5' similar to gb:D13903 Mouse mRNA for
MPTPdelta (MOUSE);.
Length = 684
Score = 73.0 bits (176), Expect = 6e-12
Identities = 67/234 (28%), Positives = 99/234 (41%), Gaps = 22/234 (9%)
Frame = +2
Query: 445 DSTRIALQFPRGQYLGDFIHANRISGKPLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIV 504
+STR+ LQ RG D+I+A+ + G +I TQ P+ T +DFWRM+W+ +V
Sbjct: 17 ESTRVCLQPIRGFEGSDYINASFLDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVV 196
Query: 505 MLTSRKE--PERCEYYWPKSPSDPAVTVPGGLRIENFGV-----YQAPDPL---FRVTHL 554
MLT +E E+C YWP S R + F V Y P + F+VT
Sbjct: 197 MLTKLREMGREKCHQYWPAERS---------ARYQYFVVDPMAEYNMPQYILREFKVTDA 349
Query: 555 RLIGPDREERHVEHWQ-GDVNNSSNMYSPLNILRLLRNASK---------PVVIHDHLGV 604
R D + R V +Q D S + + K P+ +H GV
Sbjct: 350 R----DGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGV 517
Query: 605 SRAACLVAAEIAICSLLRGPTYKYPVQ--RAVQFLRQRRPFSIETPMQYIFVHR 656
R + I +L Y+ V + V+ +R +RP +T QY F +R
Sbjct: 518 GRTGVFITLSI----VLERMRYEGVVDIFQTVKMVRTQRPAMGQTEDQYQFCYR 667
>gb|AW822729.1|AW822729 uq17g09.y1 Ren Stubbs mouse thymus Mus musculus cDNA clone
IMAGE:2802784 5' similar to gb:X63440 M.musculus mRNA
for P19-protein tyrosine phosphatase (MOUSE);.
Length = 629
Score = 72.6 bits (175), Expect = 8e-12
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 8/184 (4%)
Frame = +1
Query: 439 PRVHCKDSTRIALQFPRGQYLGDFIHANRISGKPLFNEFIMTQAPMKNTVDDFWRMVWQE 498
P +H D +R+ L D+I+AN I G ++ TQ P+ NTV DFWRM+W+
Sbjct: 76 PGLHV-DHSRVKLTLKTPSQDSDYINANFIKGVYGPKAYVATQGPLANTVIDFWRMIWEY 252
Query: 499 EVPYIVMLTSRKE--PERCEYYWPKSPSDPAVTVPGGLRIENFGVYQAPDPLFRVTHLRL 556
V IVM E ++CE YWP DP P + EN D R L
Sbjct: 253 NVVIIVMACREFEMGRKKCERYWPLYGEDPITFAPFKISCEN--EQARTDYFIRTLLLEF 426
Query: 557 IGPDRE--ERHVEHWQGDVNNSSNMYSPLNILRLLRNASK----PVVIHDHLGVSRAACL 610
R + H +W D + S+ S L+++ L+R + P IH G R +
Sbjct: 427 QNESRRLYQFHYVNWP-DHDVPSSFDSILDMISLMRKYQEHEDVPXCIHCSAGCGRTGAI 603
Query: 611 VAAE 614
A +
Sbjct: 604 CAID 615
>gb|AA572365.1|AA572365 vl88d10.r1 Stratagene mouse diaphragm (#937303) Mus musculus cDNA
clone IMAGE:987763 5' similar to gb:M36033 Mouse
leukocyte common antigen-related phosphatase mRNA,
complete (MOUSE);.
Length = 531
Score = 71.4 bits (172), Expect = 2e-11
Identities = 36/96 (37%), Positives = 57/96 (58%), Gaps = 2/96 (2%)
Frame = +1
Query: 427 SASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGKPLFNEFIMTQAPMKN 486
++ + N+EK R + D +R+ L G D+I+A+ I+G N+FI Q P +
Sbjct: 67 ASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEE 246
Query: 487 TVDDFWRMVWQEEVPYIVMLTSRKEPE--RCEYYWP 520
TV+DFWRM+W++ IVM+T+ KE + +C YWP
Sbjct: 247 TVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWP 354
>gb|AW323457.1|AW323457 uo72e10.y1 NCI_CGAP_Mam1 Mus musculus cDNA clone IMAGE:2648106 5'
similar to gb:Z37988 M.musculus LAR mRNA encoding
protein tyrosine phosphatase (MOUSE);.
Length = 661
Score = 71.4 bits (172), Expect = 2e-11
Identities = 43/123 (34%), Positives = 62/123 (49%), Gaps = 3/123 (2%)
Frame = +3
Query: 405 IGGMERRFEILENSVNHIP-FTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFI 463
+ ME F++L NS H F + N+ K R + + TR+ LQ RG D+I
Sbjct: 204 VTAMELEFKLLANSKAHTSRFVSANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYI 383
Query: 464 HANRISGKPLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWPK 521
+A+ + G +I TQ P+ + +DFWRM+W+ IVMLT +E R C YWP
Sbjct: 384 NASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREICHQYWPA 563
Query: 522 SPS 524
S
Sbjct: 564 ERS 572
>gb|AW412296.1|AW412296 uq48e12.y1 NCI_CGAP_Mam5 Mus musculus cDNA clone IMAGE:2812654 5'
similar to gb:M36033 Mouse leukocyte common
antigen-related phosphatase mRNA, complete (MOUSE);.
Length = 613
Score = 70.6 bits (170), Expect = 3e-11
Identities = 36/96 (37%), Positives = 56/96 (57%), Gaps = 2/96 (2%)
Frame = +1
Query: 427 SASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGKPLFNEFIMTQAPMKN 486
++ + N+EK R + D +R+ L G D+I+A+ I+G N+FI Q P +
Sbjct: 247 ASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEE 426
Query: 487 TVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
TV+DFWRM+W++ IVM+T+ KE + C YWP
Sbjct: 427 TVNDFWRMIWEQNTATIVMVTNLKERKEX*CAQYWP 534
>gb|BE226747.1|BE226747 us72d12.y1 NCI_CGAP_Mam4 Mus musculus cDNA clone IMAGE:3256727 5'
similar to gb:M36033 Mouse leukocyte common
antigen-related phosphatase mRNA, complete (MOUSE);.
Length = 468
Score = 69.9 bits (168), Expect = 5e-11
Identities = 36/91 (39%), Positives = 54/91 (58%), Gaps = 2/91 (2%)
Frame = +2
Query: 432 NQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGKPLFNEFIMTQAPMKNTVDDF 491
N+EK R + D +R+ L G D+I+A+ I+G N+FI Q P + TV+DF
Sbjct: 5 NKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDF 184
Query: 492 WRMVWQEEVPYIVMLTSRKEPE--RCEYYWP 520
WRM+W++ IVM+T+ KE + +C YWP
Sbjct: 185 WRMIWEQNTATIVMVTNLKERKECKCAQYWP 277
>gb|AI324509.1|AI324509 mr74a03.y1 Stratagene mouse heart (#937316) Mus musculus cDNA clone
IMAGE:603148 5' similar to gb:L09562 Mouse receptor-type
protein tyrosine phosphatase gamma homolog (MOUSE);.
Length = 769
Score = 69.9 bits (168), Expect = 5e-11
Identities = 38/120 (31%), Positives = 63/120 (51%), Gaps = 6/120 (5%)
Frame = +3
Query: 407 GMERRFEILENSVNHIPFT--HSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYL--GDF 462
G FE ++ + T HS +N+ K R + D +R+ L+ G+ D+
Sbjct: 48 GFSEDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPLPGKDSKHSDY 227
Query: 463 IHANRISGKPLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTS--RKEPERCEYYWP 520
I+AN + G +I TQ P+K+T +DFWRM+W++ I+M+T+ K +C+ YWP
Sbjct: 228 INANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIIMITNLVEKGRRKCDQYWP 407
>gb|AA144877.1|AA144877 mr74c03.r1 Stratagene mouse heart (#937316) Mus musculus cDNA clone
IMAGE:603172 5' similar to gb:L09247 PROTEIN-TYROSINE
PHOSPHATASE GAMMA PRECURSOR (HUMAN); gb:L09562 Mouse
receptor-type protein tyrosine phosphatase gamma homolog
(MOUSE);.
Length = 626
Score = 68.7 bits (165), Expect = 1e-10
Identities = 38/124 (30%), Positives = 64/124 (50%), Gaps = 6/124 (4%)
Frame = +2
Query: 407 GMERRFEILENSVNHIPFT--HSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYL--GDF 462
G FE ++ + T HS +N+ K R + D +R+ L+ G+ GD+
Sbjct: 47 GFSEDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPLPGKDSRHGDY 226
Query: 463 IHANRISGKPLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTS--RKEPERCEYYWP 520
I+AN + G +I TQ P+K+T +DFWRM+W++ I+++ + K + C+ YWP
Sbjct: 227 INANYVDGYNKARRYIATQGPLKSTFEDFWRMIWEQNTGIIIVIATLVEKGGKMCDQYWP 406
Query: 521 KSPS 524
S
Sbjct: 407 AENS 418
Database: GenBank Mouse EST entries
Posted date: Jul 9, 2000 8:11 PM
Number of letters in database: 441,526,214
Number of sequences in database: 1,284,374
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355366140
Number of Sequences: 1284374
Number of extensions: 4409345
Number of successful extensions: 20565
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 20462
Number of HSP's gapped (non-prelim): 99
length of query: 753
length of database: 147,175,404
effective HSP length: 57
effective length of query: 696
effective length of database: 73,966,086
effective search space: 51480395856
effective search space used: 51480395856
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 72 (32.5 bits)
