Score E
Sequences producing significant alignments: (bits) Value
gb|AW320213.1|AW320213 uo15h10.y1 NCI_CGAP_Mam6 Mus musculu... 185 1e-46
gb|AW320190.1|AW320190 uo15f03.y1 NCI_CGAP_Mam6 Mus musculu... 185 1e-46
gb|W97937.1|W97937 me73g07.r1 Soares mouse embryo NbME13.5 ... 184 3e-46
gb|AI196632.1|AI196632 ui53c05.y1 Sugano mouse liver mlia M... 183 5e-46
gb|AW414075.1|AW414075 uo92c09.y1 NCI_CGAP_Mam3 Mus musculu... 183 5e-46
gb|AW211750.1|AW211750 uo85b07.y1 NCI_CGAP_Mam3 Mus musculu... 182 9e-46
gb|AI892414.1|AI892414 mm91b03.y2 Stratagene mouse embryoni... 182 9e-46
gb|AA575064.1|AA575064 vm34h06.r1 Knowles Solter mouse blas... 179 7e-45
gb|BE226546.1|BE226546 ia22c07.y1 Mouse E10 5 12 5 Pancreas... 178 2e-44
gb|AA915254.1|AA915254 vz12e06.r1 Stratagene mouse heart (#... 178 2e-44
gb|AA562705.1|AA562705 vl63f11.r1 Knowles Solter mouse blas... 176 6e-44
gb|AI527507.1|AI527507 uf12d12.y1 Soares_mammary_gland_NMLM... 175 1e-43
gb|AA739025.1|AA739025 vv66b03.r1 Stratagene mouse skin (#9... 175 2e-43
gb|AW908249.1|AW908249 uf75c01.y1 Soares_mammary_gland_NMLM... 174 2e-43
gb|AI604712.1|AI604712 vd70b08.y1 Beddington mouse embryoni... 171 2e-42
gb|AA733587.1|AA733587 vu73d03.r1 Stratagene mouse skin (#9... 171 2e-42
gb|AW763065.1|AW763065 ur60d04.y1 NCI_CGAP_Mam3 Mus musculu... 171 3e-42
gb|AI385897.1|AI385897 me43h02.y1 Soares mouse embryo NbME1... 170 5e-42
gb|AI325724.1|AI325724 mm91b03.y1 Stratagene mouse embryoni... 144 2e-41
gb|AA171216.1|AA171216 ms51d02.r1 Life Tech mouse embryo 13... 168 2e-41
gb|AI314367.1|AI314367 uj51f05.y1 Sugano mouse liver mlia M... 167 4e-41
gb|AW762670.1|AW762670 ur58b11.y1 NCI_CGAP_Mam3 Mus musculu... 166 7e-41
gb|AA168895.1|AA168895 ms41g02.r1 Life Tech mouse embryo 13... 130 3e-40
gb|AA646842.1|AA646842 vn37e06.r1 Stratagene mouse skin (#9... 162 8e-40
gb|AA571481.1|AA571481 vm06g01.r1 Knowles Solter mouse blas... 162 1e-39
gb|AW489276.1|AW489276 UI-M-BH3-ata-b-01-0-UI.s1 NIH_BMAP_M... 159 7e-39
dbj|C89598.1|C89598 C89598 Mouse early blastocyst cDNA Mus ... 159 1e-38
gb|AA166484.1|AA166484 ms46f12.r1 Life Tech mouse embryo 13... 126 1e-38
gb|AA656534.1|AA656534 vv15h06.r1 Stratagene mouse heart (#... 156 6e-38
gb|AA145182.1|AA145182 ms04d11.r1 Stratagene mouse skin (#9... 155 2e-37
gb|BE196803.1|BE196803 ug70g04.y1 Soares_mammary_gland_NMLM... 154 2e-37
gb|AA407831.1|AA407831 EST02463 Mouse 7.5 dpc embryo ectopl... 154 3e-37
gb|AA409552.1|AA409552 EST01293 Mouse 7.5 dpc embryo ectopl... 153 5e-37
gb|AA733931.1|AA733931 vv25f12.r1 Stratagene mouse heart (#... 153 8e-37
gb|AA165820.1|AA165820 ms42c09.r1 Life Tech mouse embryo 13... 123 1e-36
gb|AA980132.1|AA980132 ua30c09.r1 Soares_mammary_gland_NbMM... 152 2e-36
gb|AA073299.1|AA073299 mm83b11.r1 Stratagene mouse embryoni... 151 2e-36
gb|AA537668.1|AA537668 vk44e01.r1 Soares_mammary_gland_NbMM... 151 3e-36
gb|AA473128.1|AA473128 vd63a10.r1 Knowles Solter mouse blas... 151 3e-36
gb|AW682701.1|AW682701 EST00915 E8.5 mouse craniofacial sub... 150 4e-36
gb|AA516921.1|AA516921 vh97h01.r1 Barstead mouse myotubes M... 150 6e-36
gb|AA170052.1|AA170052 ms52h04.r1 Life Tech mouse embryo 13... 141 7e-36
gb|AA474781.1|AA474781 vd57h09.r1 Knowles Solter mouse blas... 148 2e-35
gb|AA980471.1|AA980471 ua41f09.r1 Soares_mammary_gland_NbMM... 120 3e-35
gb|AA153397.1|AA153397 ms02d12.r1 Stratagene mouse embryoni... 126 6e-35
gb|AA823801.1|AA823801 vt08d02.r1 Barstead mouse myotubes M... 145 2e-34
gb|AI853820.1|AI853820 UI-M-BH0-ajr-a-09-0-UI.s1 NIH_BMAP_M... 142 1e-33
gb|AA793846.1|AA793846 vr35f02.r1 Barstead mouse myotubes M... 141 2e-33
gb|AW647447.1|AW647447 EST325990 R3DA Mus musculus cDNA clo... 137 4e-32
gb|AW209784.1|AW209784 ul47b01.y1 Rashbass mouse MOV 9 5 op... 133 5e-31
Alignments
>gb|AW320213.1|AW320213 uo15h10.y1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:2609251 5'
similar to gb:M23419 INITIATION FACTOR 5A (HUMAN);.
Length = 572
Score = 185 bits (465), Expect = 1e-46
Identities = 89/154 (57%), Positives = 119/154 (76%)
Frame = +1
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 79 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 258
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ +S E+++DL++PEGDLG
Sbjct: 259 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQ-DSGEVREDLRLPEGDLGK 435
Query: 127 TIREALEKDEGSVLVQVVAACGEEAILGYKISTK 160
I + + E +L+ V++A EEA + K K
Sbjct: 436 EIEQKYDCGE-EILITVLSAMTEEAAVAIKAMAK 534
>gb|AW320190.1|AW320190 uo15f03.y1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:2609213 5'
similar to gb:M23419 INITIATION FACTOR 5A (HUMAN);.
Length = 576
Score = 185 bits (465), Expect = 1e-46
Identities = 89/154 (57%), Positives = 119/154 (76%)
Frame = +2
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 83 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 262
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ +S E+++DL++PEGDLG
Sbjct: 263 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQ-DSGEVREDLRLPEGDLGK 439
Query: 127 TIREALEKDEGSVLVQVVAACGEEAILGYKISTK 160
I + + E +L+ V++A EEA + K K
Sbjct: 440 EIEQKYDCGE-EILITVLSAMTEEAAVAIKAMAK 538
>gb|W97937.1|W97937 me73g07.r1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA
clone IMAGE:401244 5' similar to gb:M23419 INITIATION
FACTOR 5A (HUMAN);.
Length = 599
Score = 184 bits (462), Expect = 3e-46
Identities = 88/154 (57%), Positives = 119/154 (77%)
Frame = +2
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 125 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 304
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ +S E+++DL++PEGDLG
Sbjct: 305 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQ-DSGEVREDLRLPEGDLGK 481
Query: 127 TIREALEKDEGSVLVQVVAACGEEAILGYKISTK 160
I + + E +++ V++A EEA + K K
Sbjct: 482 EIEQKYDCGE-EIVITVLSAMTEEAAVAIKAMAK 580
>gb|AI196632.1|AI196632 ui53c05.y1 Sugano mouse liver mlia Mus musculus cDNA clone
IMAGE:1886120 5' similar to gb:M23419 INITIATION FACTOR
5A (HUMAN);.
Length = 555
Score = 183 bits (460), Expect = 5e-46
Identities = 88/150 (58%), Positives = 117/150 (77%)
Frame = +3
Query: 11 FDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTT 70
F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V IDIFT
Sbjct: 60 FETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTG 239
Query: 71 KKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGNTIRE 130
KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ +S E+++DL++PEGDLG I +
Sbjct: 240 KKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQ-DSGEVREDLRLPEGDLGKEIEQ 416
Query: 131 ALEKDEGSVLVQVVAACGEEAILGYKISTK 160
+ E +L+ V++A EEA + K K
Sbjct: 417 KYDCGE-EILITVLSATTEEAAVAIKAMAK 503
>gb|AW414075.1|AW414075 uo92c09.y1 NCI_CGAP_Mam3 Mus musculus cDNA clone IMAGE:2650000 5'
similar to gb:M23419 INITIATION FACTOR 5A (HUMAN);.
Length = 616
Score = 183 bits (460), Expect = 5e-46
Identities = 88/154 (57%), Positives = 118/154 (76%)
Frame = +1
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 109 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 288
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ +S E+++DL++PEGDLG
Sbjct: 289 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQ-DSGEVREDLRLPEGDLGK 465
Query: 127 TIREALEKDEGSVLVQVVAACGEEAILGYKISTK 160
I + + E +L+ V++A EEA + K
Sbjct: 466 EIEQKYDCGE-EILITVLSAMTEEAAVAINAMAK 564
>gb|AW211750.1|AW211750 uo85b07.y1 NCI_CGAP_Mam3 Mus musculus cDNA clone IMAGE:2649301 5'
similar to gb:M23419 INITIATION FACTOR 5A (HUMAN);.
Length = 599
Score = 182 bits (458), Expect = 9e-46
Identities = 89/154 (57%), Positives = 116/154 (74%)
Frame = +2
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 92 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 271
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMD P +KR ++ L I+DG+ SL+ +S E+++DL++PEGDLG
Sbjct: 272 IFTGKKYEDICPSTHNMDCPHIKRNDFQLXGIQDGYLSLLQ-DSGEVREDLRLPEGDLGQ 448
Query: 127 TIREALEKDEGSVLVQVVAACGEEAILGYKISTK 160
I + + E +L+ V+AA EEA K K
Sbjct: 449 EIEQKYDCGE-EILITVLAAMNEEAACCIKAMAK 547
>gb|AI892414.1|AI892414 mm91b03.y2 Stratagene mouse embryonic carcinomaRA (#937318) Mus
musculus cDNA clone IMAGE:535757 5' similar to gb:M23419
INITIATION FACTOR 5A (HUMAN);.
Length = 630
Score = 182 bits (458), Expect = 9e-46
Identities = 87/150 (58%), Positives = 117/150 (78%)
Frame = +3
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 123 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 302
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ P+ E+++DL++PEGDLG
Sbjct: 303 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLL-PDRWEVREDLRLPEGDLGX 479
Query: 127 TIREALEKDEGSVLVQVVAACGEEAILGYK 156
I + + E +L+ V++A E A + K
Sbjct: 480 EIEQKYDCGE-EILITVLSAMTEXAAVAIK 566
>gb|AA575064.1|AA575064 vm34h06.r1 Knowles Solter mouse blastocyst B1 Mus musculus cDNA
clone IMAGE:992123 5' similar to gb:M23419 INITIATION
FACTOR 5A (HUMAN);.
Length = 542
Score = 179 bits (450), Expect = 7e-45
Identities = 85/145 (58%), Positives = 116/145 (79%)
Frame = +3
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 93 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 272
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ +S E+++DL++PEG+LG
Sbjct: 273 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQ-DSGEVREDLRLPEGELGK 449
Query: 127 TIREALEKDEGSVLVQVVAACGEEA 151
I + + E +L+ V++A +EA
Sbjct: 450 EIEQKYDCGE-EILITVLSAMTKEA 521
>gb|BE226546.1|BE226546 ia22c07.y1 Mouse E10 5 12 5 Pancreas cDNA Library Mus musculus cDNA
5' similar to gb:M23419 INITIATION FACTOR 5A (HUMAN);.
Length = 611
Score = 178 bits (447), Expect = 2e-44
Identities = 85/145 (58%), Positives = 115/145 (78%)
Frame = +2
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 116 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 295
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ +S E+++DL++PE DLG
Sbjct: 296 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQ-DSGEVREDLRLPERDLGK 472
Query: 127 TIREALEKDEGSVLVQVVAACGEEA 151
I + + E +L+ V++A E+A
Sbjct: 473 EIEQKYDCGE-EILITVLSAMTEDA 544
>gb|AA915254.1|AA915254 vz12e06.r1 Stratagene mouse heart (#937316) Mus musculus cDNA clone
IMAGE:1315522 5' similar to gb:M23419 INITIATION FACTOR
5A (HUMAN);.
Length = 523
Score = 178 bits (446), Expect = 2e-44
Identities = 84/147 (57%), Positives = 111/147 (75%)
Frame = +2
Query: 7 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
D+ F++ ++GA+ATFP QCSALRKN V+++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 116 DDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 295
Query: 67 IFTTKKLEDICPSTHNMDVPVVKRREYILMSIEDGFCSLMDPESCELKDDLKMPEGDLGN 126
IFT KK EDICPSTHNMDVP +KR ++ L+ I+DG+ SL+ +S E+++DL++PEGDLG
Sbjct: 296 IFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQ-DSAEVREDLRLPEGDLGK 472
Query: 127 TIREALEKDEGSVLVQVVAACGEEAIL 153
I + + CGEE ++
Sbjct: 473 EIEQKYD-------------CGEEILI 514
Database: GenBank Mouse EST entries
Posted date: Jul 9, 2000 8:11 PM
Number of letters in database: 441,526,214
Number of sequences in database: 1,284,374
Lambda K H
0.315 0.132 0.379
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82893536
Number of Sequences: 1284374
Number of extensions: 944604
Number of successful extensions: 3979
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3806
Number of HSP's gapped (non-prelim): 140
length of query: 161
length of database: 147,175,404
effective HSP length: 54
effective length of query: 107
effective length of database: 77,819,208
effective search space: 8326655256
effective search space used: 8326655256
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 65 (29.7 bits)
