Score E
Sequences producing significant alignments: (bits) Value
dbj|AU080478.1|AU080478 AU080478 Sugano mouse brain mncb Mu... 70 2e-11
gb|AI607306.1|AI607306 uc40a12.x1 Soares_mammary_gland_NMLM... 67 1e-10
gb|AA867254.1|AA867254 vx25c03.r1 Soares_thymus_2NbMT Mus m... 61 1e-08
gb|AA265124.1|AA265124 mz46h10.r1 Barstead mouse pooled org... 61 1e-08
gb|AA960240.1|AA960240 ub55e11.s1 Soares_mammary_gland_NMLM... 60 2e-08
gb|AW475753.1|AW475753 un71f07.y1 Sugano mouse kidney mkia ... 60 2e-08
gb|AA616287.1|AA616287 vn64c02.r1 Barstead mouse proximal c... 57 1e-07
dbj|AU035700.1|AU035700 AU035700 Sugano mouse brain mncb Mu... 55 6e-07
gb|AA960354.1|AA960354 ub57f09.s1 Soares_mammary_gland_NMLM... 55 6e-07
gb|BE132652.1|BE132652 uf20g07.x1 Soares_mammary_gland_NMLM... 55 7e-07
gb|AA989971.1|AA989971 ua55b12.r1 Soares_thymus_2NbMT Mus m... 54 1e-06
gb|AW987112.1|AW987112 uf14c12.x1 Soares_mammary_gland_NMLM... 54 1e-06
gb|AA119394.1|AA119394 mp63g04.r1 Soares_thymus_2NbMT Mus m... 54 1e-06
gb|AW476689.1|AW476689 uq81d01.y1 NCI_CGAP_Lu33 Mus musculu... 53 2e-06
dbj|C89479.1|C89479 C89479 Mouse early blastocyst cDNA Mus ... 53 2e-06
gb|AI529902.1|AI529902 ui83g10.y1 Sugano mouse liver mlia M... 52 4e-06
gb|AI327309.1|AI327309 mp63g04.x1 Soares_thymus_2NbMT Mus m... 52 4e-06
gb|AI837594.1|AI837594 UI-M-AK0-adg-a-04-0-UI.s1 NIH_BMAP_M... 52 5e-06
gb|AI837095.1|AI837095 UI-M-AK0-adc-c-09-0-UI.s1 NIH_BMAP_M... 52 5e-06
gb|AA213329.1|AA213329 mw83h05.r1 Soares mouse NML Mus musc... 52 5e-06
gb|AI196699.1|AI196699 ui53f05.y1 Sugano mouse liver mlia M... 52 6e-06
gb|AI132132.1|AI132132 vy80f06.r1 Stratagene mouse macropha... 52 6e-06
gb|AW412942.1|AW412942 uq51g09.y1 Sugano mouse liver mlia M... 51 1e-05
gb|AI836453.1|AI836453 UI-M-AI0-aak-e-07-0-UI.s1 NIH_BMAP_M... 50 1e-05
gb|AI835323.1|AI835323 UI-M-AQ0-aah-b-07-0-UI.s1 NIH_BMAP_M... 50 1e-05
gb|AI786566.1|AI786566 uj17e05.y1 Sugano mouse kidney mkia ... 50 1e-05
gb|AI227102.1|AI227102 uj11h08.y1 Sugano mouse kidney mkia ... 50 2e-05
gb|AI836525.1|AI836525 UI-M-AI0-aal-h-07-0-UI.s1 NIH_BMAP_M... 48 6e-05
gb|AA754797.1|AA754797 vu21e11.r1 Barstead mouse myotubes M... 47 1e-04
gb|AI930328.1|AI930328 ul63d01.y1 Sugano mouse kidney mkia ... 47 1e-04
gb|AI316011.1|AI316011 uj61c12.y1 Sugano mouse liver mlia M... 43 2e-04
gb|AI048132.1|AI048132 ud67c10.y1 Sugano mouse liver mlia M... 46 3e-04
gb|AI196700.1|AI196700 ui53f06.y1 Sugano mouse liver mlia M... 46 3e-04
gb|AI530311.1|AI530311 ui91e11.y1 Sugano mouse liver mlia M... 46 3e-04
gb|AI324074.1|AI324074 mg91g08.x1 Soares mouse embryo NbME1... 46 3e-04
gb|AA840027.1|AA840027 vw68a03.r1 Stratagene mouse heart (#... 45 5e-04
gb|AI467564.1|AI467564 ve37g10.x1 Soares_mammary_gland_NbMM... 45 6e-04
gb|AI303856.1|AI303856 ui57c05.y1 Sugano mouse liver mlia M... 45 6e-04
gb|AI157003.1|AI157003 ud10g04.r1 Soares_NMPu Mus musculus ... 45 8e-04
gb|AI844981.1|AI844981 UI-M-BG0-ahu-c-09-0-UI.s1 NIH_BMAP_M... 44 0.001
gb|AA198094.1|AA198094 mv13a05.r1 GuayWoodford Beier mouse ... 44 0.001
gb|AA840046.1|AA840046 vw68c03.r1 Stratagene mouse heart (#... 43 0.002
gb|AA014215.1|AA014215 mh18g11.r1 Soares mouse placenta 4Nb... 43 0.003
gb|AA221187.1|AA221187 my25c02.r1 Barstead mouse pooled org... 41 0.007
gb|AA271550.1|AA271550 vb74c04.r1 Soares mouse 3NME12 5 Mus... 41 0.012
gb|AA655387.1|AA655387 vv10b10.r1 Stratagene mouse heart (#... 39 0.047
gb|AA050543.1|AA050543 mj20c07.r1 Soares mouse embryo NbME1... 38 0.062
gb|AA214903.1|AA214903 mu76d06.r1 Stratagene mouse embryoni... 38 0.081
gb|AA270816.1|AA270816 va70h03.r1 Soares mouse 3NME12 5 Mus... 38 0.11
gb|AA437833.1|AA437833 ve47g01.r1 Beddington mouse embryoni... 36 0.24
Alignments
>dbj|AU080478.1|AU080478 AU080478 Sugano mouse brain mncb Mus musculus cDNA clone MNCb-5708
5'.
Length = 759
Score = 69.9 bits (168), Expect = 2e-11
Identities = 46/186 (24%), Positives = 85/186 (44%)
Frame = +2
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
P P P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T
Sbjct: 215 PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 394
Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAA 213
+ + + V + G + K +E++ + + Q +K+ D AQ A
Sbjct: 395 ISVVGLIVYVIKKYGASFGEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQA-LVQ 571
Query: 214 LKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKLIND 273
+ + ++++ L LE YR+ + E+K R++Y + R E + ++ D
Sbjct: 572 KRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHXSVQNMMRRKEEEHMI----D 739
Query: 274 SVEKQV 279
VEK V
Sbjct: 740 WVEKHV 757
>gb|AI607306.1|AI607306 uc40a12.x1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:1400446 3' similar to gb:X60221 ATP SYNTHASE B
CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN); gb:U29530 Mus
musculus clone TA-9 ATP synthase b chain homolog mRNA,
partial (MOUSE);.
Length = 549
Score = 67.1 bits (161), Expect = 1e-10
Identities = 42/177 (23%), Positives = 81/177 (45%)
Frame = +2
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
P P P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T
Sbjct: 14 PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 193
Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAA 213
+ + + V + G + K +E++ + + Q +K+ D AQ A
Sbjct: 194 ISVVGLIVYVIKKYGASFGEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQA-LVQ 370
Query: 214 LKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKL 270
+ + ++++ L LE YR+ + E+K R++Y + R E + ++ L
Sbjct: 371 KRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHISVQNMMRRREDEHMIDL 541
>gb|AA867254.1|AA867254 vx25c03.r1 Soares_thymus_2NbMT Mus musculus cDNA clone
IMAGE:1265476 5' similar to gb:X60221 ATP SYNTHASE B
CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN);.
Length = 480
Score = 60.9 bits (145), Expect = 1e-08
Identities = 38/156 (24%), Positives = 72/156 (45%)
Frame = -1
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
P P P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T
Sbjct: 465 PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 286
Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAA 213
+ + + V + G + K +E++ + + Q +K+ D AQ A
Sbjct: 285 ISVVGLIVYVIKKYGASFGEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQA-LVQ 109
Query: 214 LKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRI 249
+ + ++++ L LE YR+ + E+K R+
Sbjct: 108 KRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRL 1
>gb|AA265124.1|AA265124 mz46h10.r1 Barstead mouse pooled organs MPLRB4 Mus musculus cDNA
clone IMAGE:716515 5' similar to gb:X60221 ATP SYNTHASE
B CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN); gb:U29530 Mus
musculus clone TA-9 ATP synthase b chain homolog mRNA,
partial (MOUSE);.
Length = 674
Score = 60.5 bits (144), Expect = 1e-08
Identities = 37/153 (24%), Positives = 72/153 (46%)
Frame = +2
Query: 99 PMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWIL 158
P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T+ +
Sbjct: 23 PEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFSTISVVG 202
Query: 159 FYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAALKEGM 218
+ V + G + K +E++ + + Q +K+ D AQ A + +
Sbjct: 203 LIVYVIKKYGASFGEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQA-LVQKRHYL 379
Query: 219 PTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEY 251
++++ L LE YR+ + E+K R++Y
Sbjct: 380 FDVQRNNIALALEVTYRERLHKAYKEVKNRLDY 478
>gb|AA960240.1|AA960240 ub55e11.s1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:1381676 3' similar to gb:X60221 ATP SYNTHASE B
CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN);.
Length = 513
Score = 60.1 bits (143), Expect = 2e-08
Identities = 37/153 (24%), Positives = 71/153 (46%)
Frame = +3
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
P P P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T
Sbjct: 15 PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 194
Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAA 213
+ + + V + G + K +E++ + + Q +K+ D AQ A
Sbjct: 195 ISVVGLIVYVIKKYGASFGEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQA-LVQ 371
Query: 214 LKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIK 246
+ + ++++ + LE YR+ + T E+K
Sbjct: 372 KRHYLFDVQRNNIAVALEVTYRERIHTAYKEVK 470
>gb|AW475753.1|AW475753 un71f07.y1 Sugano mouse kidney mkia Mus musculus cDNA clone
IMAGE:2520229 5' similar to gb:X60221 ATP SYNTHASE B
CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN); gb:U29530 Mus
musculus clone TA-9 ATP synthase b chain homolog mRNA,
partial (MOUSE);.
Length = 768
Score = 59.7 bits (142), Expect = 2e-08
Identities = 40/158 (25%), Positives = 70/158 (43%)
Frame = +3
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
P P P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T
Sbjct: 201 PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 380
Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAA 213
+ + + V + G + K +E+V + + Q +K D AQ A F
Sbjct: 381 ISVVGLIVYVIKKYGASFGEFIDKLNEEKVAQLEEVKQSSMKHIQDAIDMENAQHALFQK 560
Query: 214 LKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEY 251
+ +++ L L YR+ + E+K R+ Y
Sbjct: 561 RHYLFDVQM-NNIALAL*VTYRERLHKAYKEVKNRLXY 671
>gb|AA616287.1|AA616287 vn64c02.r1 Barstead mouse proximal colon MPLRB6 Mus musculus cDNA
clone IMAGE:1025954 5' similar to gb:X60221 ATP SYNTHASE
B CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN); gb:U29530 Mus
musculus clone TA-9 ATP synthase b chain homolog mRNA,
partial (MOUSE);.
Length = 532
Score = 57.4 bits (136), Expect = 1e-07
Identities = 35/148 (23%), Positives = 70/148 (46%)
Frame = +3
Query: 104 KTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLV 163
K RL ++P+ +F TG +GPY+ GL + ++KE++V + T+ + + V
Sbjct: 9 KVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFSTISVVGLIVYV 188
Query: 164 SRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAALKEGMPTSLK 223
+ G + K +E++ + + Q +K+ D AQ A + + +
Sbjct: 189 IKKYGASFGEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQA-LVQKRHYLFDVQR 365
Query: 224 DSMQLQLEAAYRKNVQTISNEIKRRIEY 251
+++ L LE YR+ + E+K R++Y
Sbjct: 366 NNIALALEVTYRERLHKAYKEVKNRLDY 449
>dbj|AU035700.1|AU035700 AU035700 Sugano mouse brain mncb Mus musculus cDNA clone MNCb-0768.
Length = 759
Score = 55.0 bits (130), Expect = 6e-07
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
Frame = +2
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
P P P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T
Sbjct: 215 PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 394
Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLK---EAVDFRKTSAAQTAS 210
+ + + V + G + K +E++ + + Q +K +A+D K A T S
Sbjct: 395 ISVVGLIVYVIKKYGASFGEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAPAG-TGS 571
Query: 211 FAALKEGMPTSLKDSMQLQLEAAYRKNV 238
A L K+ + L L YR V
Sbjct: 572 XAPLP---LXCAKEYIGLALXVTYRDRV 646
>gb|AA960354.1|AA960354 ub57f09.s1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:1381865 3' similar to gb:X60221 ATP SYNTHASE B
CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN); gb:U29530 Mus
musculus clone TA-9 ATP synthase b chain homolog mRNA,
partial (MOUSE);.
Length = 608
Score = 55.0 bits (130), Expect = 6e-07
Identities = 35/145 (24%), Positives = 67/145 (46%)
Frame = +3
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
P P P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T
Sbjct: 15 PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 194
Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAA 213
+ + + V + G + K +E++ + + Q +K+ D AQ A
Sbjct: 195 ISVVGLIVYVIKKYGASFGEFIDKLNEEKIAQLREVKQSSMKQIQDAIDMEKAQQA-LVQ 371
Query: 214 LKEGMPTSLKDSMQLQLEAAYRKNV 238
+ + ++++ L LE YR+ +
Sbjct: 372 KRHYLFDVQRNNIALALEVTYRERL 446
>gb|BE132652.1|BE132652 uf20g07.x1 Soares_mammary_gland_NMLMG Mus musculus cDNA clone
IMAGE:1511964 3' similar to gb:X60221 ATP SYNTHASE B
CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN);.
Length = 454
Score = 54.7 bits (129), Expect = 7e-07
Identities = 35/145 (24%), Positives = 67/145 (46%)
Frame = +3
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
P P P Y K RL ++P+ +F TG +GPY+ GL + ++KE++V + T
Sbjct: 15 PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 194
Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAA 213
+ + + V + G + K +E++ + + Q +K+ D AQ A
Sbjct: 195 ISVVGLIVYVIKKYGASFGEFIDKLNEEKIAQLEEVKQSSMKQIQDAIDMEKAQQA-LVQ 371
Query: 214 LKEGMPTSLKDSMQLQLEAAYRKNV 238
+ + ++++ L LE YR+ +
Sbjct: 372 KRHYLFDVQRNNIALALEVTYRERL 446
Database: GenBank Mouse EST entries
Posted date: Jul 9, 2000 8:11 PM
Number of letters in database: 441,526,214
Number of sequences in database: 1,284,374
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142593255
Number of Sequences: 1284374
Number of extensions: 1970786
Number of successful extensions: 10196
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10117
Number of HSP's gapped (non-prelim): 84
length of query: 301
length of database: 147,175,404
effective HSP length: 55
effective length of query: 246
effective length of database: 76,534,834
effective search space: 18827569164
effective search space used: 18827569164
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)
