TBLASTN 2.0.14 [Jun-29-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 963224590-27822-28842

Query= C25G4.6 CE05307   PDZ domain (Also known as DHR or
GLGF). (2 domains) (CAMBRIDGE) TR:Q18167 protein_id:CAA94569.1
         (274 letters)


Database: GenBank Mouse EST entries
           1,284,374 sequences; 441,526,214 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs


Taxonomy reports



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|AV282310.1|AV282310  AV282310 RIKEN full-length enriched...    31  9.3
gb|AA896187.1|AA896187  vx62c02.r1 Stratagene mouse macropha...    31  9.3

Alignments
>dbj|AV282310.1|AV282310 AV282310 RIKEN full-length enriched, adult male testis (DH10B) Mus
           musculus cDNA clone 4933429G04 3'.
          Length = 228

 Score = 30.9 bits (68), Expect = 9.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
 Frame = +2

Query: 90  RVHIPEDRAKIIQRREGYVYELATLVWVQNGP---------KLGLGIKHFQNRV 134
           R H+ ED A ++ RR    + ++T +W  +GP         +LG+G K+ Q+ +
Sbjct: 65  RSHLSEDSAPLLFRRPNVPH*ISTEIWYHHGPCALWHCSKTQLGMGRKNKQSGI 226



>gb|AA896187.1|AA896187 vx62c02.r1 Stratagene mouse macrophage (#937306) Mus musculus cDNA
           clone IMAGE:1279778 5' similar to WP:ZK849.2 CE16748 ;.
          Length = 430

 Score = 30.9 bits (68), Expect = 9.3
 Identities = 21/71 (29%), Positives = 38/71 (52%), Gaps = 7/71 (9%)
 Frame = +1

Query: 124 GLGI-----KHFQNRVLVSRVDPGSLAEKC--LVLGDHLCDVDGIPVSDKDVARDLLVKN 176
           GLGI     K     +L+S + PG  A++C  L +GD +  V+G+ + D      + + +
Sbjct: 10  GLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 189

Query: 177 IQEKGKVTFVV 187
            Q++G++ F V
Sbjct: 190 -QQRGEIEFEV 219




  Database: GenBank Mouse EST entries
    Posted date:  Jul 9, 2000  8:11 PM
  Number of letters in database: 441,526,214
  Number of sequences in database:  1,284,374
  
Lambda     K      H
   0.316    0.135    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134271845
Number of Sequences: 1284374
Number of extensions: 1608210
Number of successful extensions: 6657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6657
Number of HSP's gapped (non-prelim): 4
length of query: 274
length of database: 147,175,404
effective HSP length: 55
effective length of query: 219
effective length of database: 76,534,834
effective search space: 16761128646
effective search space used: 16761128646
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 68 (30.9 bits)