Score E
Sequences producing significant alignments: (bits) Value
gb|AW629949.1|AW629949 hh73c05.y1 NCI_CGAP_GU1 Homo sapiens... 98 1e-19
gb|AA460064.1|AA460064 zx66d04.r1 Soares_total_fetus_Nb2HF8... 98 1e-19
gb|AW500157.1|AW500157 UI-HF-BN0-akc-d-05-0-UI.r1 NIH_MGC_5... 82 9e-15
gb|AA773590.1|AA773590 af76f07.r1 Soares_NhHMPu_S1 Homo sap... 67 5e-10
gb|BE170428.1|BE170428 QV4-HT0538-130300-128-g11 HT0538 Hom... 54 3e-06
gb|AA256505.1|AA256505 zr85g08.r1 Soares_NhHMPu_S1 Homo sap... 49 9e-05
gb|AW246119.1|AW246119 2821502.5prime NIH_MGC_7 Homo sapien... 46 7e-04
emb|AL041898.1|AL041898 DKFZp434I0819_r1 434 (synonym: htes... 45 0.002
gb|AA648516.1|AA648516 ns22g03.s1 NCI_CGAP_GCB1 Homo sapien... 40 0.043
gb|AA495772.1|AA495772 zw04e09.r1 Soares_NhHMPu_S1 Homo sap... 40 0.043
gb|AI971186.1|AI971186 wr26b11.x1 NCI_CGAP_Pr28 Homo sapien... 39 0.13
gb|AI674489.1|AI674489 wc44h01.x1 NCI_CGAP_Pr28 Homo sapien... 38 0.22
gb|AI335242.1|AI335242 tb29e03.x1 NCI_CGAP_Kid12 Homo sapie... 35 1.9
gb|AA234669.1|AA234669 zs37f05.r1 Soares_NhHMPu_S1 Homo sap... 34 3.2
Alignments
>gb|AW629949.1|AW629949 hh73c05.y1 NCI_CGAP_GU1 Homo sapiens cDNA clone IMAGE:2968424 5'
similar to WP:M03F4.8 CE12370 ;.
Length = 559
Score = 98.3 bits (241), Expect = 1e-19
Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 21/191 (10%)
Frame = +2
Query: 146 YVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQKMCIVDYVIRNTDRHMDNLLVRH-- 203
+V GY+ ++ D L + +FQ F+++ I+DY+IRNTDR DN LVR+
Sbjct: 11 FVEGYKEAEYWLRKFEADP--LPENIRKQFQSQFERLVILDYIIRNTDRGNDNWLVRYEK 184
Query: 204 --------------VPGEE--INLAAIDNGLAFPVRHPECTSRFRSFPFRWSNLPWAQGE 247
+ EE I +AAIDNGLAFP +HP+ +R++PF W+ LP A+
Sbjct: 185 QKCEKEIDHKESKWIDDEEFLIKIAAIDNGLAFPFKHPD---EWRAYPFHWAWLPQAKVP 355
Query: 248 FDPVLRRHVLSLLTP-QFVHRLCVDLKKLFR--HGIASSNYMLVNSQLRVVRGQIWNLRQ 304
F +R +L ++ FV LC DL +L + G + + SQ+ V+RGQI L Q
Sbjct: 356 FSEEIRNLILPYISDMNFVQDLCEDLYELCKTDKGFDKATF---ESQMSVMRGQILXLTQ 526
Query: 305 AILANESPGEM 315
A+ +SP ++
Sbjct: 527 ALRDGKSPFQL 559
>gb|AA460064.1|AA460064 zx66d04.r1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone
IMAGE:796423 5' similar to SW:YJK0_YEAST P42951
HYPOTHETICAL 70.2 KD PROTEIN IN GSH1-CHS6 INTERGENIC
REGION. ;.
Length = 501
Score = 98.3 bits (241), Expect = 1e-19
Identities = 65/166 (39%), Positives = 93/166 (55%), Gaps = 21/166 (12%)
Frame = +3
Query: 182 MCIVDYVIRNTDRHMDNLLVRH----------------VPGEE--INLAAIDNGLAFPVR 223
+ I+DY+IRNTDR DN LVR+ + EE I +AAIDNGLAFP +
Sbjct: 3 LVILDYIIRNTDRGNDNWLVRYEKQKCEKEIDHKESKWIDDEEFLIKIAAIDNGLAFPFK 182
Query: 224 HPECTSRFRSFPFRWSNLPWAQGEFDPVLRRHVLSLLTP-QFVHRLCVDLKKLFR--HGI 280
HP+ +R++PF W+ LP A+ F +R +L ++ FV LC DL +LF+ G
Sbjct: 183 HPD---EWRAYPFHWAWLPQAKVPFSEEIRNLILPYISDMNFVQDLCEDLYELFKTDKGF 353
Query: 281 ASSNYMLVNSQLRVVRGQIWNLRQAILANESPGEMACRDPIIVSRS 326
+ + SQ+ V+RGQI NL QA+ +SP ++ +IV RS
Sbjct: 354 DKATF---ESQMSVMRGQILNLTQALRDGKSPFQLVQIPCVIVERS 482
>gb|AW500157.1|AW500157 UI-HF-BN0-akc-d-05-0-UI.r1 NIH_MGC_50 Homo sapiens cDNA clone
IMAGE:3076641 5'.
Length = 484
Score = 82.3 bits (200), Expect = 9e-15
Identities = 54/143 (37%), Positives = 76/143 (52%), Gaps = 18/143 (12%)
Frame = +1
Query: 129 RFFGHYDVRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQKMCIVDYV 188
R F + PK GSFQL+V GY ++ D L + +FQ F+++ I+DY+
Sbjct: 67 RKFHRRGLPPKIGSFQLFVEGYNEVEYWVRKFEADP--LPENIRKQFQSQFERLVILDYI 240
Query: 189 IRNTDRHMDNLLVRH----------------VPGEE--INLAAIDNGLAFPVRHPECTSR 230
IRNTDR DN LVR+ + EE I +AAI NGLAFP +HP+
Sbjct: 241 IRNTDRGNDNWLVRYEKQKCEKEIDHKESKWIDDEEFLIKIAAIYNGLAFPFKHPD---* 411
Query: 231 FRSFPFRWSNLPWAQGEFDPVLR 253
+R++PF W+ LP A+ F +R
Sbjct: 412 WRAYPFHWAWLPQAKVPFSEEIR 480
>gb|AA773590.1|AA773590 af76f07.r1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:1047973
5'.
Length = 424
Score = 66.7 bits (160), Expect = 5e-10
Identities = 44/116 (37%), Positives = 65/116 (55%), Gaps = 1/116 (0%)
Frame = +1
Query: 209 INLAAIDNGLAFPVRHPECTSRFRSFPFRWSNLPWAQGEFDPVLRRHVLSLLT-PQFVHR 267
I +AAIDNGLA ++H +R++PF W+ LP A+ F ++ +L ++ P+FV
Sbjct: 52 IKVAAIDNGLALRLKH---AGSWRAYPFYWAWLPEARVPFSQEIKDLILPKISDPKFVKD 222
Query: 268 LCVDLKKLFRHGIASSNYMLVNSQLRVVRGQIWNLRQAILANESPGEMACRDPIIV 323
L DL +LF + Q+ V+RGQI NL QA+ NESP + P+IV
Sbjct: 223 LEEDLYELFGRDRGFDRGQF-HKQIAVMRGQILNLTQALKHNESPLHLVQMPPVIV 387
>gb|BE170428.1|BE170428 QV4-HT0538-130300-128-g11 HT0538 Homo sapiens cDNA.
Length = 491
Score = 53.9 bits (127), Expect = 3e-06
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +1
Query: 226 ECTSRFRSFPFRWSNLPWAQGEFDPVLRRHVLSLLT-PQFVHRLCVDLKKLFRHGIASSN 284
E + +R++PF W+ LP A+ F ++ +L ++ P FV L DL +LF+
Sbjct: 58 EASDSWRAYPFYWAWLPQAKVPFSQEIKDLILPKISDPNFVKDLEEDLYELFKKDPGFDR 237
Query: 285 YMLVNSQLRVVRGQIWNLRQAILANESPGEMACRDPIIV 323
+ Q+ V+RGQI NL QA+ N+SP + P+IV
Sbjct: 238 GQF-HKQIAVMRGQILNLTQALKDNKSPLHLVQMPPVIV 351
>gb|AA256505.1|AA256505 zr85g08.r1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:682526 5'
similar to SW:YJK0_YEAST P42951 HYPOTHETICAL 70.2 KD
PROTEIN IN GSH1-CHS6 INTERGENIC REGION. ;.
Length = 372
Score = 49.2 bits (115), Expect = 9e-05
Identities = 25/59 (42%), Positives = 35/59 (58%), Gaps = 16/59 (27%)
Frame = +3
Query: 184 IVDYVIRNTDRHMDNLLVRH----------------VPGEEINLAAIDNGLAFPVRHPE 226
++DY+IRNTDR DN L+++ V I +AAIDNGLAFP++HP+
Sbjct: 3 VLDYIIRNTDRGNDNWLIKYDCPMDSSSSRDTDWVVVKEPVIKVAAIDNGLAFPLKHPD 179
>gb|AW246119.1|AW246119 2821502.5prime NIH_MGC_7 Homo sapiens cDNA clone IMAGE:2821502 5'.
Length = 214
Score = 46.1 bits (107), Expect = 7e-04
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +2
Query: 93 GYLSEAAASIVSEMLQLDVVPTTRIVKLASPSFFYS 128
GYLSEA AS+V + L+L++VP T++V LAS +F YS
Sbjct: 11 GYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYS 118
>emb|AL041898.1|AL041898 DKFZp434I0819_r1 434 (synonym: htes3) Homo sapiens cDNA clone
DKFZp434I0819 5'.
Length = 455
Score = 44.5 bits (103), Expect = 0.002
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +3
Query: 11 DDEFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKP 57
D EF+ ++A+ AI + I P I +G SGSYFV +G I+ VFKP
Sbjct: 315 DPEFEAAVRQAELAIERCIFPERIYQGFSGSYFVKDPQGRIIAVFKP 455
>gb|AA648516.1|AA648516 ns22g03.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE:1184404 3'.
Length = 388
Score = 40.2 bits (92), Expect = 0.043
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 141 GSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQKMCIVDYVIRNT 192
GSFQL+V GY+ ++ D L + +FQ F+++ I+DY+IRNT
Sbjct: 113 GSFQLFVEGYKEAEYWLRKFEADP--LPENIRKQFQSQFERLVILDYIIRNT 262
>gb|AA495772.1|AA495772 zw04e09.r1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:768328 5'
similar to contains MER22.b2 MSR1 repetitive element ;.
Length = 144
Score = 40.2 bits (92), Expect = 0.043
Identities = 17/31 (54%), Positives = 24/31 (76%)
Frame = +2
Query: 209 INLAAIDNGLAFPVRHPECTSRFRSFPFRWS 239
I +AAIDNGLAFP++HP+ R++PF W+
Sbjct: 53 IKVAAIDNGLAFPLKHPDSC---RAYPFYWA 136
Database: GenBank Human EST entries
Posted date: Jul 9, 2000 8:11 PM
Number of letters in database: 800,131,619
Number of sequences in database: 2,121,173
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422244598
Number of Sequences: 2121173
Number of extensions: 6581386
Number of successful extensions: 32322
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32302
Number of HSP's gapped (non-prelim): 14
length of query: 380
length of database: 266,710,539
effective HSP length: 53
effective length of query: 327
effective length of database: 154,288,370
effective search space: 50452296990
effective search space used: 50452296990
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 72 (32.5 bits)
