TBLASTN 2.0.14 [Jun-29-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 963219987-4643-22983

Query= C05D2.5 CE01142    (ST.LOUIS) TR:O45134
protein_id:AAC02722.1
         (774 letters)


Database: GenBank Human EST entries
           2,121,173 sequences; 800,131,619 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs


Taxonomy reports



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AI124820.1|AI124820  am56f06.x1 Johnston frontal cortex H...    34  6.1
gb|AI124736.1|AI124736  am61d10.x1 Johnston frontal cortex H...    34  6.1
gb|AI124712.1|AI124712  am61b01.x1 Johnston frontal cortex H...    34  6.1
gb|AI124671.1|AI124671  am60d01.x1 Johnston frontal cortex H...    34  6.1
gb|AI014301.1|AI014301  am46f03.s1 Johnston frontal cortex H...    34  6.1

Alignments
>gb|AI124820.1|AI124820 am56f06.x1 Johnston frontal cortex Homo sapiens cDNA clone
           IMAGE:1539587 3' similar to contains element MSR1
           repetitive element ;.
          Length = 413

 Score = 34.0 bits (76), Expect = 6.1
 Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 663 WSNITTPR----ILRPPTLKTPYSLPRTAVIPVMKKKQPEIEQVQPKKDTTASLVRKRGR 718
           WS   TPR    +LRP     P  LPR  + P+++++ P      P++       R+R R
Sbjct: 82  WSVPKTPR*KKPLLRPLLRPLPRPLPRPLLKPLLQRRPPRRRLHLPRRH------RQRPR 243

Query: 719 PRKEKP-LEVQSPRKGL 734
           P +++P  +  SP++ L
Sbjct: 244 PLRQRPRRQAVSPQRNL 294



>gb|AI124736.1|AI124736 am61d10.x1 Johnston frontal cortex Homo sapiens cDNA clone
           IMAGE:1540051 3' similar to contains element MSR1
           repetitive element ;.
          Length = 394

 Score = 34.0 bits (76), Expect = 6.1
 Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 663 WSNITTPR----ILRPPTLKTPYSLPRTAVIPVMKKKQPEIEQVQPKKDTTASLVRKRGR 718
           WS   TPR    +LRP     P  LPR  + P+++++ P      P++       R+R R
Sbjct: 96  WSVPKTPR*KKPLLRPLLRPLPRPLPRPLLKPLLQRRPPRRRLHLPRRH------RQRPR 257

Query: 719 PRKEKP-LEVQSPRKGL 734
           P +++P  +  SP++ L
Sbjct: 258 PLRQRPRRQAVSPQRNL 308



>gb|AI124712.1|AI124712 am61b01.x1 Johnston frontal cortex Homo sapiens cDNA clone
           IMAGE:1540009 3' similar to contains element MSR1
           repetitive element ;.
          Length = 423

 Score = 34.0 bits (76), Expect = 6.1
 Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 663 WSNITTPR----ILRPPTLKTPYSLPRTAVIPVMKKKQPEIEQVQPKKDTTASLVRKRGR 718
           WS   TPR    +LRP     P  LPR  + P+++++ P      P++       R+R R
Sbjct: 46  WSVPKTPR*KKPLLRPLLRPLPRPLPRPLLKPLLQRRPPRRRLHLPRRH------RQRPR 207

Query: 719 PRKEKP-LEVQSPRKGL 734
           P +++P  +  SP++ L
Sbjct: 208 PLRQRPRRQAVSPQRNL 258



>gb|AI124671.1|AI124671 am60d01.x1 Johnston frontal cortex Homo sapiens cDNA clone
           IMAGE:1539937 3' similar to contains element MSR1
           repetitive element ;.
          Length = 424

 Score = 34.0 bits (76), Expect = 6.1
 Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 5/77 (6%)
 Frame = +3

Query: 663 WSNITTPR----ILRPPTLKTPYSLPRTAVIPVMKKKQPEIEQVQPKKDTTASLVRKRGR 718
           WS   TPR    +LRP     P  LPR  + P+++++ P      P++       R+R R
Sbjct: 87  WSVPKTPR*KKPLLRPLLRPLPRPLPRPLLKPLLQRRPPRRRLHLPRRH------RQRPR 248

Query: 719 PRKEKP-LEVQSPRKGL 734
           P +++P  +  SP++ L
Sbjct: 249 PLRQRPRRQAVSPQRNL 299



>gb|AI014301.1|AI014301 am46f03.s1 Johnston frontal cortex Homo sapiens cDNA clone
           IMAGE:1538621 3' similar to contains element MSR1
           repetitive element ;.
          Length = 395

 Score = 34.0 bits (76), Expect = 6.1
 Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 663 WSNITTPR----ILRPPTLKTPYSLPRTAVIPVMKKKQPEIEQVQPKKDTTASLVRKRGR 718
           WS   TPR    +LRP     P  LPR  + P+++++ P      P++       R+R R
Sbjct: 79  WSVPKTPR*KKPLLRPLLRPLPRPLPRPLLKPLLQRRPPRRRLHLPRRH------RQRPR 240

Query: 719 PRKEKP-LEVQSPRKGL 734
           P +++P  +  SP++ L
Sbjct: 241 PLRQRPRRQAVSPQRNL 291




  Database: GenBank Human EST entries
    Posted date:  Jul 8, 2000  8:03 PM
  Number of letters in database: 800,131,619
  Number of sequences in database:  2,121,173
  
Lambda     K      H
   0.313    0.128    0.364 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 738557776
Number of Sequences: 2121173
Number of extensions: 10967484
Number of successful extensions: 66351
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 66349
Number of HSP's gapped (non-prelim): 10
length of query: 774
length of database: 266,710,539
effective HSP length: 63
effective length of query: 711
effective length of database: 133,076,640
effective search space: 94617491040
effective search space used: 94617491040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 74 (33.2 bits)