Score E
Sequences producing significant alignments: (bits) Value
gb|R50888.1|R50888 yg70d04.r1 Soares infant brain 1NIB Homo... 71 4e-11
gb|AA885290.1|AA885290 al58g07.s1 Soares_NFL_T_GBC_S1 Homo ... 67 9e-10
emb|AL048775.1|AL048775 DKFZp566N193_r1 566 (synonym: hfkd2... 66 1e-09
gb|AI809811.1|AI809811 wh77e01.x1 NCI_CGAP_CLL1 Homo sapien... 66 1e-09
gb|AW752347.1|AW752347 RC1-CT0199-220999-013-G09 CT0199 Hom... 66 2e-09
gb|AW452887.1|AW452887 UI-H-BI3-aly-g-04-0-UI.s1 NCI_CGAP_S... 66 2e-09
gb|AI809341.1|AI809341 we96c09.x1 Soares_NFL_T_GBC_S1 Homo ... 66 2e-09
gb|AI568154.1|AI568154 tn66b04.x1 NCI_CGAP_Lym12 Homo sapie... 66 2e-09
gb|AI436018.1|AI436018 th80g03.x1 Soares_NhHMPu_S1 Homo sap... 66 2e-09
gb|AI243542.1|AI243542 qh87e11.x1 Soares_NFL_T_GBC_S1 Homo ... 66 2e-09
gb|AI185650.1|AI185650 qe65c01.x1 Soares_fetal_lung_NbHL19W... 66 2e-09
gb|AA838095.1|AA838095 oe10f03.s1 NCI_CGAP_Ov2 Homo sapiens... 66 2e-09
gb|AA780379.1|AA780379 aa67a06.s1 NCI_CGAP_GCB1 Homo sapien... 66 2e-09
gb|T66108.1|T66108 yc75c04.r1 Soares infant brain 1NIB Homo... 65 3e-09
gb|AA974472.1|AA974472 od58a08.s1 NCI_CGAP_GCB1 Homo sapien... 65 3e-09
gb|R60643.1|R60643 yh14h04.r1 Soares infant brain 1NIB Homo... 65 3e-09
gb|AI692928.1|AI692928 wd89e01.x1 NCI_CGAP_Lu24 Homo sapien... 65 3e-09
gb|AI416959.1|AI416959 th02a10.x1 NCI_CGAP_CLL1 Homo sapien... 64 6e-09
gb|AA455971.1|AA455971 aa02a07.s1 Soares_NhHMPu_S1 Homo sap... 63 1e-08
gb|AA372002.1|AA372002 EST84099 Rhabdomyosarcoma Homo sapie... 63 1e-08
gb|BE159047.1|BE159047 MR0-HT0405-160300-202-g07 HT0405 Hom... 63 1e-08
gb|AW857786.1|AW857786 RC2-CT0321-120200-013-g11 CT0321 Hom... 63 1e-08
emb|F11954.1|F11954 HSC33H021 normalized infant brain cDNA ... 63 1e-08
emb|AL046517.1|AL046517 DKFZp434E208_r1 434 (synonym: htes3... 62 2e-08
gb|BE159045.1|BE159045 MR0-HT0405-160300-202-f12 HT0405 Hom... 62 2e-08
gb|AA305783.1|AA305783 EST176782 Colon carcinoma (Caco-2) c... 62 2e-08
gb|BE159033.1|BE159033 MR0-HT0405-160300-202-b12 HT0405 Hom... 61 4e-08
gb|R43946.1|R43946 yg22f07.s1 Soares infant brain 1NIB Homo... 61 4e-08
gb|H29721.1|H29721 ym61h08.r1 Soares infant brain 1NIB Homo... 61 4e-08
gb|R72051.1|R72051 yj86f11.r1 Soares breast 2NbHBst Homo sa... 61 7e-08
gb|AI827054.1|AI827054 wl07g04.x1 NCI_CGAP_Ut1 Homo sapiens... 60 9e-08
gb|T03332.1|T03332 IB1263 Infant brain, Bento Soares Homo s... 60 9e-08
gb|BE006537.1|BE006537 RC2-BN0130-040400-011-b07 BN0130 Hom... 59 2e-07
gb|AW630609.1|AW630609 hh85a11.y1 NCI_CGAP_GU1 Homo sapiens... 59 2e-07
gb|AI498393.1|AI498393 tm43g06.x1 NCI_CGAP_Kid11 Homo sapie... 59 3e-07
gb|AW631059.1|AW631059 hh91f05.y1 NCI_CGAP_GU1 Homo sapiens... 58 3e-07
gb|AW379107.1|AW379107 RC0-HT0232-211099-011-g06 HT0232 Hom... 58 3e-07
gb|R39428.1|R39428 yh95h06.r1 Soares placenta Nb2HP Homo sa... 58 3e-07
gb|AW612021.1|AW612021 hg83g12.x1 NCI_CGAP_Kid11 Homo sapie... 57 1e-06
gb|AA262690.1|AA262690 zs22g08.s1 NCI_CGAP_GCB1 Homo sapien... 57 1e-06
emb|F05995.1|F05995 HSC0TD021 normalized infant brain cDNA ... 57 1e-06
gb|AI830178.1|AI830178 wj86c01.x1 NCI_CGAP_Lym12 Homo sapie... 56 1e-06
gb|AI611089.1|AI611089 tt17h05.x1 NCI_CGAP_GC6 Homo sapiens... 56 1e-06
gb|BE160083.1|BE160083 QV1-HT0412-020400-136-c06 HT0412 Hom... 55 3e-06
gb|AI698714.1|AI698714 wa80h12.x1 Soares_NFL_T_GBC_S1 Homo ... 55 4e-06
gb|AA352675.1|AA352675 EST60701 Activated T-cells XX Homo s... 54 5e-06
gb|H18572.1|H18572 ym43g01.r1 Soares infant brain 1NIB Homo... 54 5e-06
gb|R35712.1|R35712 yg67d08.r1 Soares infant brain 1NIB Homo... 54 5e-06
gb|AI571769.1|AI571769 tn19e11.x1 NCI_CGAP_Brn25 Homo sapie... 53 1e-05
gb|T87744.1|T87744 ye08e09.r1 Stratagene lung (#937210) Hom... 52 2e-05
Alignments
>gb|R50888.1|R50888 yg70d04.r1 Soares infant brain 1NIB Homo sapiens cDNA clone
IMAGE:38829 5' similar to gb:M64322 HEMATOPOIETIC
PROTEIN-TYROSINE PHOSPHATASE (HUMAN);.
Length = 449
Score = 71.4 bits (172), Expect = 4e-11
Identities = 38/67 (56%), Positives = 45/67 (66%), Gaps = 4/67 (5%)
Frame = +2
Query: 459 LGDFIHANRI---SGKPLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEP-ER 514
L +I+AN I SGK FI TQ PM NTVDDFW+MVWQE+ P IVM+T KE E+
Sbjct: 50 LSTYINANYIRGYSGKE--KAFIATQGPMINTVDDFWQMVWQEDSPVIVMITKLKEKNEK 223
Query: 515 CEYYWPK 521
C YWP+
Sbjct: 224 CVLYWPE 244
>gb|AA885290.1|AA885290 al58g07.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone
IMAGE:1461564 3' similar to gb:Y00638 LEUKOCYTE COMMON
ANTIGEN PRECURSOR (HUMAN);.
Length = 675
Score = 66.7 bits (160), Expect = 9e-10
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = -2
Query: 419 VNHIPFTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGKPLFNEFI 478
V +P+ S+ Q K R + D R+ L G ++I+A+ I G ++I
Sbjct: 407 VQQVPYKGSSKPLTQNKKRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYI 228
Query: 479 MTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
Q P TVDDFWRM+W+++ IVM+T +E R C YWP
Sbjct: 227 AAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP 96
>emb|AL048775.1|AL048775 DKFZp566N193_r1 566 (synonym: hfkd2) Homo sapiens cDNA clone
DKFZp566N193.
Length = 504
Score = 66.3 bits (159), Expect = 1e-09
Identities = 28/67 (41%), Positives = 42/67 (61%), Gaps = 2/67 (2%)
Frame = +1
Query: 461 DFIHANRISGKPLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTS--RKEPERCEYY 518
D+I+AN + G +I TQ P+K+T +DFWRM+W++ IVM+TS K +C+ Y
Sbjct: 52 DYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITSLVEKGRRKCDQY 231
Query: 519 WPKSPSD 525
WP S+
Sbjct: 232 WPTENSE 252
>gb|AI809811.1|AI809811 wh77e01.x1 NCI_CGAP_CLL1 Homo sapiens cDNA clone IMAGE:2386776 3'
similar to gb:Y00638 LEUKOCYTE COMMON ANTIGEN PRECURSOR
(HUMAN);.
Length = 572
Score = 66.3 bits (159), Expect = 1e-09
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = -3
Query: 412 FEILENSVNHIPFTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGK 471
F+ + + P + NQ K R + D R+ L G ++I+A+ I G
Sbjct: 453 FQSIPRVFSKFPIKEARKPFNQNKSRYVDILPYDYNRVELSEINGDAGSNYINASYIDGF 274
Query: 472 PLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
++I Q P TVDDFWRM+W+++ IVM+T +E R C YWP
Sbjct: 273 KEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP 121
>gb|AW752347.1|AW752347 RC1-CT0199-220999-013-G09 CT0199 Homo sapiens cDNA.
Length = 467
Score = 66.0 bits (158), Expect = 2e-09
Identities = 44/108 (40%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Frame = -2
Query: 424 FTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGKPLFNEFIMTQAP 483
F S S N EK R V C D TR+ L G D+I+A+ + G N +I TQ P
Sbjct: 430 FHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGYKQKNAYIGTQGP 251
Query: 484 MKNTVDDFWRMVWQEEVPYIVMLTSRKEPERCEYYWP-----KSPSDP 526
++NT DFW MVW+++V IVM T R E WP K SDP
Sbjct: 250 LENTYRDFWLMVWEQKVLVIVM-THPL*GRRQEKVWPVLAFRKRLSDP 110
>gb|AW452887.1|AW452887 UI-H-BI3-aly-g-04-0-UI.s1 NCI_CGAP_Sub5 Homo sapiens cDNA clone
IMAGE:3069126 3'.
Length = 400
Score = 66.0 bits (158), Expect = 2e-09
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = +2
Query: 412 FEILENSVNHIPFTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGK 471
F+ + + P + NQ K R + D R+ L G ++I+A+ I G
Sbjct: 29 FQSIPRVFSKFPIKEARKPFNQNKNRYVTILPYDYNRVELSEINGDAGSNYINASYIDGF 208
Query: 472 PLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
++I Q P TVDDFWRM+W+++ IVM+T +E R C YWP
Sbjct: 209 KEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP 361
>gb|AI809341.1|AI809341 we96c09.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone
IMAGE:2348944 3' similar to gb:Y00638 LEUKOCYTE COMMON
ANTIGEN PRECURSOR (HUMAN);.
Length = 728
Score = 65.6 bits (157), Expect = 2e-09
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = -1
Query: 412 FEILENSVNHIPFTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGK 471
F+ + + P + NQ K R + D R+ L G ++I+A+ I G
Sbjct: 446 FQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGF 267
Query: 472 PLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
++I Q P TVDDFWRM+W+++ IVM+T +E R C YWP
Sbjct: 266 KEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP 114
>gb|AI568154.1|AI568154 tn66b04.x1 NCI_CGAP_Lym12 Homo sapiens cDNA clone IMAGE:2174479 3'
similar to gb:Y00638 LEUKOCYTE COMMON ANTIGEN PRECURSOR
(HUMAN);.
Length = 700
Score = 65.6 bits (157), Expect = 2e-09
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = -3
Query: 412 FEILENSVNHIPFTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGK 471
F+ + + P + NQ K R + D R+ L G ++I+A+ I G
Sbjct: 440 FQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGF 261
Query: 472 PLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
++I Q P TVDDFWRM+W+++ IVM+T +E R C YWP
Sbjct: 260 KEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP 108
>gb|AI436018.1|AI436018 th80g03.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:2125012
3' similar to gb:Y00638 LEUKOCYTE COMMON ANTIGEN
PRECURSOR (HUMAN);.
Length = 703
Score = 65.6 bits (157), Expect = 2e-09
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = -1
Query: 412 FEILENSVNHIPFTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGK 471
F+ + + P + NQ K R + D R+ L G ++I+A+ I G
Sbjct: 436 FQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGF 257
Query: 472 PLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
++I Q P TVDDFWRM+W+++ IVM+T +E R C YWP
Sbjct: 256 KEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP 104
>gb|AI243542.1|AI243542 qh87e11.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone
IMAGE:1853996 3' similar to gb:Y00638 LEUKOCYTE COMMON
ANTIGEN PRECURSOR (HUMAN);.
Length = 603
Score = 65.6 bits (157), Expect = 2e-09
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = -2
Query: 412 FEILENSVNHIPFTHSASDNNQEKCRNPRVHCKDSTRIALQFPRGQYLGDFIHANRISGK 471
F+ + + P + NQ K R + D R+ L G ++I+A+ I G
Sbjct: 431 FQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGF 252
Query: 472 PLFNEFIMTQAPMKNTVDDFWRMVWQEEVPYIVMLTSRKEPER--CEYYWP 520
++I Q P TVDDFWRM+W+++ IVM+T +E R C YWP
Sbjct: 251 KEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWP 99
Database: GenBank Human EST entries
Posted date: Jul 8, 2000 8:03 PM
Number of letters in database: 800,131,619
Number of sequences in database: 2,121,173
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646532604
Number of Sequences: 2121173
Number of extensions: 8253369
Number of successful extensions: 39380
Number of sequences better than 10.0: 204
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 39247
Number of HSP's gapped (non-prelim): 160
length of query: 753
length of database: 266,710,539
effective HSP length: 58
effective length of query: 695
effective length of database: 143,682,505
effective search space: 99859340975
effective search space used: 99859340975
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 74 (33.2 bits)
