Score E
Sequences producing significant alignments: (bits) Value
gb|AA152384.1|AA152384 zo07a08.r1 Stratagene endothelial ce... 43 0.005
gb|AW674861.1|AW674861 bb37b05.y1 NIH_MGC_10 Homo sapiens c... 41 0.013
gb|AA226751.1|AA226751 zr18d01.r1 Stratagene NT2 neuronal p... 41 0.013
gb|AW959296.1|AW959296 EST371366 MAGE resequences, MAGF Hom... 41 0.013
gb|AW675236.1|AW675236 bb33b05.y1 NIH_MGC_10 Homo sapiens c... 41 0.013
gb|AW675149.1|AW675149 bb32h05.y1 NIH_MGC_10 Homo sapiens c... 41 0.013
gb|AW631115.1|AW631115 hh92f06.y1 NCI_CGAP_GU1 Homo sapiens... 41 0.013
gb|AW601983.1|AW601983 QV4-BT0407-280100-090-f04 BT0407 Hom... 41 0.013
gb|AI149251.1|AI149251 qc86b12.x1 Soares_pregnant_uterus_Nb... 41 0.013
gb|AA662345.1|AA662345 nu89g07.s1 NCI_CGAP_Alv1 Homo sapien... 41 0.013
gb|AA339730.1|AA339730 EST44844 Fetal brain, subtracted Hom... 41 0.013
gb|AA314346.1|AA314346 EST186184 Colon carcinoma (HCC) cell... 41 0.013
gb|AA306699.1|AA306699 EST177637 Jurkat T-cells VI Homo sap... 41 0.013
gb|AA160466.1|AA160466 zq42e11.r1 Stratagene hNT neuron (#9... 41 0.013
gb|AA093859.1|AA093859 cl1249.seq.F Human fetal heart, Lamb... 41 0.013
gb|AA082830.1|AA082830 zn25g04.r1 Stratagene neuroepitheliu... 41 0.013
gb|W52915.1|W52915 zc03c05.r1 Soares_parathyroid_tumor_NbHP... 41 0.013
gb|N42289.1|N42289 yy06a05.r1 Soares melanocyte 2NbHM Homo ... 41 0.013
gb|H53975.1|H53975 yq87g12.r1 Soares fetal liver spleen 1NF... 41 0.013
gb|R35368.1|R35368 yg65g07.r1 Soares infant brain 1NIB Homo... 41 0.013
gb|T02471.1|T02471 EST00377 Hippocampus, Stratagene (cat. #... 41 0.013
gb|AA227193.1|AA227193 zr19g11.r1 Stratagene NT2 neuronal p... 41 0.013
gb|AW601962.1|AW601962 QV4-BT0407-280100-090-d02 BT0407 Hom... 41 0.013
gb|AA313321.1|AA313321 EST185217 Colon carcinoma (HCC) cell... 41 0.013
gb|AI906015.1|AI906015 RC-BT105-110399-024 BT105 Homo sapie... 41 0.013
gb|AA457316.1|AA457316 aa91a02.r1 Stratagene fetal retina 9... 41 0.013
gb|R53315.1|R53315 yg82h01.r1 Soares infant brain 1NIB Homo... 41 0.013
gb|AA309576.1|AA309576 EST180464 Jurkat T-cells V Homo sapi... 41 0.013
gb|H14969.1|H14969 ym19e11.r1 Soares infant brain 1NIB Homo... 41 0.013
gb|AA316146.1|AA316146 EST187866 HCC cell line (matastasis ... 41 0.013
gb|R89271.1|R89271 yq02b12.r1 Soares fetal liver spleen 1NF... 41 0.013
emb|F07452.1|F07452 HSC26D011 normalized infant brain cDNA ... 41 0.013
emb|AL135603.1|AL135603 DKFZp762E234_r1 762 (synonym: hmel2... 39 0.052
gb|N45694.1|N45694 yy78c06.r1 Soares_multiple_sclerosis_2Nb... 39 0.052
dbj|C03862.1|C03862 C03862 Human heart cDNA (YNakamura) Hom... 39 0.068
gb|AW601953.1|AW601953 QV4-BT0407-280100-090-a06 BT0407 Hom... 38 0.12
gb|AW954698.1|AW954698 EST366768 MAGE resequences, MAGC Hom... 36 0.45
gb|AW381979.1|AW381979 QV4-HT0316-091199-028-c05 HT0316 Hom... 35 1.0
gb|AW440246.1|AW440246 hb78a05.x1 NCI_CGAP_Ut2 Homo sapiens... 34 1.7
gb|AI797839.1|AI797839 wh79f07.x1 NCI_CGAP_CLL1 Homo sapien... 34 1.7
gb|AW152519.1|AW152519 xg65g07.x1 NCI_CGAP_Ut4 Homo sapiens... 34 2.3
gb|W03538.1|W03538 yz98h11.r1 Soares melanocyte 2NbHM Homo ... 34 2.3
gb|AI357637.1|AI357637 qy15a12.x1 NCI_CGAP_Brn23 Homo sapie... 34 3.0
gb|AA573151.1|AA573151 nj41h12.s1 NCI_CGAP_AA1 Homo sapiens... 34 3.0
gb|AA113748.1|AA113748 zn66d06.r1 Stratagene HeLa cell s3 9... 34 3.0
gb|W40150.1|W40150 zc79h04.s1 Pancreatic Islet Homo sapiens... 34 3.0
dbj|C03589.1|C03589 C03589 Human heart cDNA (YNakamura) Hom... 34 3.0
gb|AA373656.1|AA373656 EST85962 HSC172 cells I Homo sapiens... 34 3.0
gb|T56396.1|T56396 yb32h02.r1 Stratagene fetal spleen (#937... 33 3.9
gb|AA370299.1|AA370299 EST81896 Prostate gland I Homo sapie... 33 5.1
Alignments
>gb|AA152384.1|AA152384 zo07a08.r1 Stratagene endothelial cell 937223 Homo sapiens cDNA
clone IMAGE:566966 5' similar to gb:X60221 ATP SYNTHASE
B CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN);.
Length = 422
Score = 43.0 bits (99), Expect = 0.005
Identities = 19/56 (33%), Positives = 31/56 (54%)
Frame = +1
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V + Q
Sbjct: 154 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVIKPQ 321
>gb|AW674861.1|AW674861 bb37b05.y1 NIH_MGC_10 Homo sapiens cDNA clone IMAGE:2985393 5'
similar to gb:X60221 ATP SYNTHASE B CHAIN, MITOCHONDRIAL
PRECURSOR (HUMAN);.
Length = 558
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 181 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 348
>gb|AA226751.1|AA226751 zr18d01.r1 Stratagene NT2 neuronal precursor 937230 Homo sapiens
cDNA clone IMAGE:663745 5' similar to gb:X60221 ATP
SYNTHASE B CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN);.
Length = 363
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 181 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 348
>gb|AW959296.1|AW959296 EST371366 MAGE resequences, MAGF Homo sapiens cDNA.
Length = 523
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 150 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 317
>gb|AW675236.1|AW675236 bb33b05.y1 NIH_MGC_10 Homo sapiens cDNA clone IMAGE:2985009 5'
similar to gb:X60221 ATP SYNTHASE B CHAIN, MITOCHONDRIAL
PRECURSOR (HUMAN);.
Length = 579
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 179 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 346
>gb|AW675149.1|AW675149 bb32h05.y1 NIH_MGC_10 Homo sapiens cDNA clone IMAGE:2984985 5'
similar to gb:X60221 ATP SYNTHASE B CHAIN, MITOCHONDRIAL
PRECURSOR (HUMAN);.
Length = 622
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 180 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 347
>gb|AW631115.1|AW631115 hh92f06.y1 NCI_CGAP_GU1 Homo sapiens cDNA clone IMAGE:2970275 5'
similar to gb:X60221 ATP SYNTHASE B CHAIN, MITOCHONDRIAL
PRECURSOR (HUMAN);.
Length = 501
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 63 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 230
>gb|AW601983.1|AW601983 QV4-BT0407-280100-090-f04 BT0407 Homo sapiens cDNA.
Length = 334
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 110 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 277
>gb|AI149251.1|AI149251 qc86b12.x1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone
IMAGE:1721087 3' similar to gb:X60221 ATP SYNTHASE B
CHAIN, MITOCHONDRIAL PRECURSOR (HUMAN);.
Length = 453
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 330 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 163
>gb|AA662345.1|AA662345 nu89g07.s1 NCI_CGAP_Alv1 Homo sapiens cDNA clone IMAGE:1217916
similar to gb:X60221 ATP SYNTHASE B CHAIN, MITOCHONDRIAL
PRECURSOR (HUMAN);.
Length = 571
Score = 41.4 bits (95), Expect = 0.013
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 94 PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQ 149
P P P Y K R ++P+ +F TG +GPY+ GL + ++KE++V +
Sbjct: 170 PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAE 337
Database: GenBank Human EST entries
Posted date: Jul 8, 2000 8:03 PM
Number of letters in database: 800,131,619
Number of sequences in database: 2,121,173
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258008727
Number of Sequences: 2121173
Number of extensions: 3677896
Number of successful extensions: 18400
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 18351
Number of HSP's gapped (non-prelim): 60
length of query: 301
length of database: 266,710,539
effective HSP length: 57
effective length of query: 244
effective length of database: 145,803,678
effective search space: 35576097432
effective search space used: 35576097432
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)
