Score E
Sequences producing significant alignments: (bits) Value
pir||T21616 hypothetical protein F32A11.3 - Caenorhabditis ... 555 e-157
gb|AAF41075.1| (AE002420) hypothetical protein [Neisseria m... 36 0.75
emb|CAB71296.1| (AJ251919) chorion protein s19 [Ceratitis c... 35 0.99
gb|AAF60574.1| (AC006768) Hypothetical protein Y45G12B.2 [C... 35 0.99
gb|AAF48345.1| (AE003495) CG11584 gene product [Drosophila ... 34 1.7
sp|P34333|YKZ6_CAEEL HYPOTHETICAL 113.7 KD PROTEIN C14B9.6 ... 34 1.7
pir||T42215 zonadhesin - mouse >gi|3327421|gb|AAC26680.1| (... 34 1.7
gb|AAC79482.1| (AF090813) outer membrane protein I precurso... 34 2.2
gb|AAC79488.1| (AF090819) outer membrane protein I precurso... 34 2.9
gb|AAA16647.1| (L19964) outer membrane protein IA [Neisseri... 34 2.9
gb|AAC79490.1| (AF090821) outer membrane protein I precurso... 34 2.9
gb|AAC79485.1| (AF090816) outer membrane protein I precurso... 34 2.9
gb|AAC79489.1| (AF090820) outer membrane protein I precurso... 34 2.9
gb|AAF20843.1| (AF200752) porin [Neisseria gonorrhoeae] >gi... 34 2.9
gb|AAA16644.1| (L19962) outer membrane protein IA [Neisseri... 34 2.9
gb|AAC99630.1| (AF044783) outer membrane porin [Neisseria g... 34 2.9
gb|AAA16648.1| (L19965) outer membrane protein IA [Neisseri... 34 2.9
pir||S24202 protein 1 - Neisseria gonorrhoeae (fragment) >g... 32 6.5
pir||S24677 Cpo 17 protein - fruit fly (Drosophila melanoga... 32 6.5
prf||1211338A lipoprotein B100 [Homo sapiens] 32 6.5
sp|Q01617|CPO_DROME PUTATIVE COUCH POTATO PROTEIN >gi|13454... 32 6.5
emb|CAA78664.1| (Z14312) Cpo 61.2 [Drosophila melanogaster] 32 6.5
gb|AAA51742.1| (M12413) apolipoprotein B100 [Homo sapiens] 32 6.5
emb|CAA70118.1| (Y08914) s19 chorion protein [Ceratitis cap... 32 6.5
gb|AAA35549.1| (J02610) apolipoprotein B-100 precursor [Hom... 32 6.5
pir||S24761 Cpo 61.1 protein - fruit fly (Drosophila melano... 32 6.5
gb|AAC38565.1| (AF015119) outer membrane protein I precurso... 32 6.5
pir||S24678 Cpo 61.2 protein - fruit fly (Drosophila melano... 32 6.5
emb|CAA78663.1| (Z14311) Cpo 17 [Drosophila melanogaster] 32 6.5
gb|AAC38566.1| (AF015120) outer membrane protein I precurso... 32 6.5
emb|CAA28420.1| (X04714) apo-B100 precursor [Homo sapiens] 32 8.6
gb|AAC38568.1| (AF015122) outer membrane protein I precurso... 32 8.6
emb|CAA83515.1| (Z31725) predicted trithorax protein [Droso... 32 8.6
gb|AAB04636.1| (M14162) apolipoprotein B-100 precursor [Hom... 32 8.6
gb|AAC79493.1| (AF090824) outer membrane protein I precurso... 32 8.6
ref|NP_000375.1| apolipoprotein B precursor >gi|114014|sp|P... 32 8.6
gb|AAC79477.1| (AF090808) outer membrane protein I precurso... 32 8.6
prf||1207169A lipoprotein B [Homo sapiens] 32 8.6
gb|AAA16642.1| (L19960) outer membrane protein IA [Neisseri... 32 8.6
pir||LPHUB apolipoprotein B-100 precursor - human 32 8.6
gb|AAA51758.1| (M15421) apolipoprotein B-100 [Homo sapiens] 32 8.6
emb|CAA27044.1| (X03325) apolipoprotein B fragment [Homo sa... 32 8.6
gb|AAB00481.1| (M19828) apolipoprotein B-100 precursor [Hom... 32 8.6
gb|AAA16634.1| (L19958) outer membrane protein IA [Neisseri... 32 8.6
gb|AAA51750.1| (M10374) apolipoprotein B100 [Homo sapiens] 32 8.6
sp|P20659|TRX_DROME TRITHORAX PROTEIN >gi|158818|gb|AAA2902... 32 8.6
emb|CAB51856.1| (AJ010482) Myopodin protein [Homo sapiens] 32 8.6
pir||A35085 trithorax protein - fruit fly (Drosophila melan... 32 8.6
pir||T05453 trehalose-6-phosphate phosphatase homolog F7K2.... 32 8.6
gb|AAF20846.1| (AF200755) porin [Neisseria gonorrhoeae] 32 8.6
Alignments
>pir||T21616 hypothetical protein F32A11.3 - Caenorhabditis elegans
emb|CAB04225.1| (Z81521) predicted using Genefinder~cDNA EST yk233g4.5 comes from
this gene~cDNA EST yk233g4.3 comes from this gene
[Caenorhabditis elegans]
Length = 353
Score = 555 bits (1416), Expect = e-157
Identities = 281/353 (79%), Positives = 281/353 (79%)
Query: 1 MSYAQSFYADQKKVEKPAEQXXXXXXXXXXXXXXXXEDPLTPSQIQDAIRLYXXXXXXXX 60
MSYAQSFYADQKKVEKPAEQ EDPLTPSQIQDAIRLY
Sbjct: 1 MSYAQSFYADQKKVEKPAEQASSPATAAFPATTPIAEDPLTPSQIQDAIRLYRSVLSLSA 60
Query: 61 XXXXXXXXQAAAPVAPEQPIVHSDYYGGPSDIPLSYRVKYTTTQQAPASPAPDFTEXXXX 120
QAAAPVAPEQPIVHSDYYGGPSDIPLSYRVKYTTTQQAPASPAPDFTE
Sbjct: 61 SAPSSPVRQAAAPVAPEQPIVHSDYYGGPSDIPLSYRVKYTTTQQAPASPAPDFTEQQLM 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLHKMYDDEESGYCFARKKDVEQE 180
MLHKMYDDEESGYCFARKKDVEQE
Sbjct: 121 AQLQALQIQQQQQPAPDVPVVEPVQQVQQKPKVAPKMLHKMYDDEESGYCFARKKDVEQE 180
Query: 181 EEVPEIHVAAPVTTPIPTYSAPPVNYEAPVFNNYYSKGVSGPSEYIGMSNDCKFIYDNQR 240
EEVPEIHVAAPVTTPIPTYSAPPVNYEAPVFNNYYSKGVSGPSEYIGMSNDCKFIYDNQR
Sbjct: 181 EEVPEIHVAAPVTTPIPTYSAPPVNYEAPVFNNYYSKGVSGPSEYIGMSNDCKFIYDNQR 240
Query: 241 SVPASYAQKNEYTLVNAAQTAAPVINYRQEEQEEHGGEDITQVPASPAVTSRFRGLIKNA 300
SVPASYAQKNEYTLVNAAQTAAPVINYRQEEQEEHGGEDITQVPASPAVTSRFRGLIKNA
Sbjct: 241 SVPASYAQKNEYTLVNAAQTAAPVINYRQEEQEEHGGEDITQVPASPAVTSRFRGLIKNA 300
Query: 301 QTPVQATAPIVVERITPVAQNSYGAFMPVNQMSMESEYQLPVLNDLASCIEHY 353
QTPVQATAPIVVERITPVAQNSYGAFMPVNQMSMESEYQLPVLNDLASCIEHY
Sbjct: 301 QTPVQATAPIVVERITPVAQNSYGAFMPVNQMSMESEYQLPVLNDLASCIEHY 353
>gb|AAF41075.1| (AE002420) hypothetical protein [Neisseria meningitidis MC58]
Length = 235
Score = 35.6 bits (80), Expect = 0.75
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 211 FNNYYSKGVSGPSEYIGMSNDCKFIYDNQRSVPASYAQKNEYTLVNAAQT 260
++ Y+ KG +E + + NDC + NQR ASY KN+ ++ + A T
Sbjct: 117 WHTYFVKGSQAETEGVWVHNDCPYDKGNQRYKDASYHGKNDNSVKSRAPT 166
>emb|CAB71296.1| (AJ251919) chorion protein s19 [Ceratitis capitata]
Length = 326
Score = 35.2 bits (79), Expect = 0.99
Identities = 46/171 (26%), Positives = 61/171 (34%), Gaps = 37/171 (21%)
Query: 184 PEIHVAAPVTT---PIPTYSAPPVNYEAPVFNNYYSKGVSGPSEYIGMSNDCKFIYDNQR 240
P +AP T P P+YSAP +Y AP S PS S+ +
Sbjct: 172 PAATYSAPTATYSVPAPSYSAPAPSYSAPA----PSYSAPAPSYSAPSSSYAE------- 220
Query: 241 SVPASYAQKNEYTLVNAAQTAAPVINYRQEEQEEHGGED----ITQVPASPAVTSRFRGL 296
PASY +A AP Y +GG T +PA+ + +
Sbjct: 221 PAPASY----------SAPAPAPAAGYGAAPSSGYGGASAAPKYTVLPATITQLNPGKTS 270
Query: 297 IKNAQTPVQ-ATAPIVVERITPVAQ--------NSYGAFMPVNQMSMESEY 338
K Q+P+Q +T + V PVA SYGA S S Y
Sbjct: 271 YKTYQSPIQYSTVTLPVAAAGPVANLYVPENAGGSYGASAGYGSSSGSSSY 321
>gb|AAF60574.1| (AC006768) Hypothetical protein Y45G12B.2 [Caenorhabditis elegans]
Length = 309
Score = 35.2 bits (79), Expect = 0.99
Identities = 23/93 (24%), Positives = 44/93 (46%), Gaps = 8/93 (8%)
Query: 183 VPEIHVAAPVTTPIPTYSAPPVNYEAPVFNNYYSKGVSGPSEYIGMSNDCKFIYDNQRSV 242
+PE++ P P +AP ++ E PV NN S P+ ++ M + + N
Sbjct: 137 LPELNRPVPSPAPPQLKNAPVMHKEVPVHNNRSST----PATHLEMEDTASYSVSNN--- 189
Query: 243 PASYAQKNEYTLVNAAQTAAPVINYRQEEQEEH 275
++A+K Y +++ T P++ R + EE+
Sbjct: 190 DVTFARKKNYGAESSSDT-RPLLQLRDADNEEN 221
>gb|AAF48345.1| (AE003495) CG11584 gene product [Drosophila melanogaster]
Length = 1015
Score = 34.4 bits (77), Expect = 1.7
Identities = 48/176 (27%), Positives = 59/176 (33%), Gaps = 36/176 (20%)
Query: 177 VEQEEEVPEIHVAAPVTTPI--PTYSAP-----------PVNYEAPVFNNYYSKGVSGPS 223
V Q+ V + +AP P+ TYSAP PV +APV YS P
Sbjct: 403 VAQQAPVVQQSYSAPAPAPVVQQTYSAPAPVVQETIQQAPVIQQAPVVQQSYSAPAPAP- 461
Query: 224 EYIGMSNDCKFIYDNQRSVPASYAQKNEYTLVNAAQTAAPVINYRQEEQEEHGGEDITQV 283
+ S PA Q+ Q APV+ E I Q
Sbjct: 462 -----------VVQQSYSAPAPVVQETIQQAPVIQQ--APVVQQSYSAPAPVVQETIQQA 508
Query: 284 PASPAVTSRFRGLIKNAQTPV-------QATAPIVVERI--TPVAQNSYGAFMPVN 330
P + A PV A AP+V E I PV Q SY A PV+
Sbjct: 509 PVIQQAPVVQQSYSAPAPAPVVQQSYSAPAPAPVVQESIQQAPVIQQSYTAPAPVS 564
>sp|P34333|YKZ6_CAEEL HYPOTHETICAL 113.7 KD PROTEIN C14B9.6 IN CHROMOSOME III
pir||S44758 C14B9.6 protein - Caenorhabditis elegans
gb|AAA27950.1| (L15188) Glutamine-rich protein; putative [Caenorhabditis elegans]
Length = 1018
Score = 34.4 bits (77), Expect = 1.7
Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 4/60 (6%)
Query: 249 KNEYTLVNAAQTAAPVINYRQEEQ---EEHGGEDITQVPASPAVTSRFRGLIKNAQTPVQ 305
K +Y +N +T P+I EE +E GG+ + P + + +R GL +NA+ PV+
Sbjct: 479 KMQYDAMNGVKTQ-PMIEEVDEEDGNGQEEGGDALVNTPTTSSAAARRSGLARNAKKPVR 537
>pir||T42215 zonadhesin - mouse
gb|AAC26680.1| (U97068) zonadhesin [Mus musculus]
Length = 5376
Score = 34.4 bits (77), Expect = 1.7
Identities = 27/109 (24%), Positives = 42/109 (37%), Gaps = 9/109 (8%)
Query: 164 DEESGYCFARKKDVEQEEEVPEIHVAAPVTTPIPTYSAPP-----VNYEAPVF----NNY 214
D + Y A E+ PE+ + VTT P + P V EA F
Sbjct: 646 DVTAAYVEATNASPEETSVPPEVTILTEVTTVSPEETTVPTEVPIVLIEATAFPTGETTL 705
Query: 215 YSKGVSGPSEYIGMSNDCKFIYDNQRSVPASYAQKNEYTLVNAAQTAAP 263
Y++ + P+E G+ + + + SVP E T V+ +T P
Sbjct: 706 YTEVPTVPTEVTGVHTEVTNVSPEETSVPTEETISTEVTTVSPEETTVP 754
>gb|AAC79482.1| (AF090813) outer membrane protein I precursor [Neisseria
gonorrhoeae]
Length = 327
Score = 34.0 bits (76), Expect = 2.2
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 204 VNYEAPVFNNYYSKGVSGPSEYIGMSNDCKFIYDNQRSVPASYAQKNEYTLVNAAQTAAP 263
V Y++P F G SG +Y+ N K ++ S A + KN V A +
Sbjct: 147 VRYDSPEF-----AGFSGSVQYVPNDNSGK---NHSESYHAGFNYKNSGFFVQYAGSYKR 198
Query: 264 VINYRQEEQEEH---GGEDITQVPASPAVTSRFRGLI------KNAQTPVQATAPIVVER 314
NY E+ + H GG D + AS AV + L N+QT V ATA
Sbjct: 199 H-NYTTEKHQVHRLVGGYDHDALYASVAVQQQDAKLTWSNDNSHNSQTEVAATAAYRFGN 257
Query: 315 ITPVAQNSYG 324
+TP ++G
Sbjct: 258 VTPRVSYAHG 267
>gb|AAC79488.1| (AF090819) outer membrane protein I precursor [Neisseria
gonorrhoeae]
Length = 327
Score = 33.6 bits (75), Expect = 2.9
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 204 VNYEAPVFNNYYSKGVSGPSEYIGMSNDCKFIYDNQRSVPASYAQKNEYTLVNAAQTAAP 263
V Y++P F G SG +Y+ N K + S A + KN V A +
Sbjct: 147 VRYDSPEF-----AGFSGSVQYVPNDNSGK---NRSESYHAGFNYKNSGFFVQYAGSYKR 198
Query: 264 VINYRQEEQEEH---GGEDITQVPASPAVTSRFRGLI------KNAQTPVQATAPIVVER 314
NY E+ + H GG D + AS AV + L N+QT V ATA
Sbjct: 199 H-NYTTEKHQVHRLVGGYDHDALYASVAVQQQDAKLTWSNDNSHNSQTEVAATAAYRFGN 257
Query: 315 ITPVAQNSYG 324
+TP ++G
Sbjct: 258 VTPRVSYAHG 267
>gb|AAA16647.1| (L19964) outer membrane protein IA [Neisseria gonorrhoeae]
Length = 327
Score = 33.6 bits (75), Expect = 2.9
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 204 VNYEAPVFNNYYSKGVSGPSEYIGMSNDCKFIYDNQRSVPASYAQKNEYTLVNAAQTAAP 263
V Y++P F G SG +Y+ N K + S A + KN V A +
Sbjct: 147 VRYDSPEF-----AGFSGSVQYVPNDNSGK---NRSESYHAGFNYKNSGFFVQYAGSYKR 198
Query: 264 VINYRQEEQEEH---GGEDITQVPASPAVTSRFRGLI------KNAQTPVQATAPIVVER 314
NY E+ + H GG D + AS AV + L N+QT V ATA
Sbjct: 199 H-NYTTEKHQVHRLVGGYDHDALYASVAVQQQDAKLTWSNDNSHNSQTEVAATAAYRFGN 257
Query: 315 ITPVAQNSYG 324
+TP ++G
Sbjct: 258 VTPRVSYAHG 267
Database: nr
Posted date: Jul 9, 2000 11:06 PM
Number of letters in database: 162,524,432
Number of sequences in database: 517,904
Lambda K H
0.311 0.129 0.369
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99333957
Number of Sequences: 517904
Number of extensions: 3997578
Number of successful extensions: 8346
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 8321
Number of HSP's gapped (non-prelim): 71
length of query: 353
length of database: 162,524,432
effective HSP length: 60
effective length of query: 293
effective length of database: 131,450,192
effective search space: 38514906256
effective search space used: 38514906256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 71 (32.1 bits)
