Score E
Sequences producing significant alignments: (bits) Value
gb|AAF52881.1| (AE003628) me31B gene product [Drosophila me... 652 0.0
sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE >g... 645 0.0
sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54 >gi|104... 611 e-174
ref|NP_031867.1| DEAD (aspartate-glutamate-alanine-aspartat... 610 e-174
pir||S22651 probable RNA helicase (EC 3.6.1.-) RCK - human 609 e-173
sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE P5... 609 e-173
ref|NP_004388.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypepti... 609 e-173
dbj|BAA77391.1| (AB013609) DEAD box protein [Cavia porcellus] 608 e-173
pir||A39157 probable RNA helicase (EC 3.6.1.-) - fruit fly ... 604 e-172
gb|AAB94769.1| (AF038995) putative RNA helicase RCK [Mus mu... 602 e-171
emb|CAB71054.1| (AL137898) DEAD box RNA helicase RH12 [Arab... 600 e-171
emb|CAA09203.1| (AJ010464) RNA helicase [Arabidopsis thaliana] 599 e-170
pir||T02466 hypothetical protein F4I18.21 - Arabidopsis tha... 596 e-169
emb|CAA09199.1| (AJ010460) RNA helicase [Arabidopsis thaliana] 592 e-168
sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE ST... 579 e-164
emb|CAB65518.1| (AJ011564) ATP-dependent RNA helicase [Yarr... 575 e-163
ref|NP_010121.1| (putative) DEAD box RNA helicase; Dhh1p >g... 575 e-163
pir||T01230 probable RNA helicase (EC 3.6.1.-) F6N23.6 - Ar... 566 e-160
emb|CAB39031.1| (AL034559) ATP-dependent RNA Helicase [Plas... 553 e-156
gb|AAF24010.1|AF083031_7 (AF083031) RNA helicase [Guillardi... 340 1e-92
gb|AAB58726.1| (AF001211) translation initiation factor [Cr... 302 5e-81
sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 296 3e-79
pir||T02861 EIF-4A protein - Leishmania major >gi|3002483|g... 296 3e-79
sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION FACTOR ... 294 8e-79
ref|NP_012397.1| translation initiation factor eIF4A; Tif2p... 293 2e-78
sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR 4A-LIKE P... 292 5e-78
sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 292 5e-78
sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 291 7e-78
gb|AAD38596.1|AF145621_1 (AF145621) eukaryotic initiation f... 290 2e-77
gb|AAF52317.1| (AE003612) eIF-4a gene product [Drosophila m... 290 2e-77
sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 285 7e-76
pir||S00986 translation initiation factor eIF-4A I - mouse 283 2e-75
emb|CAA73167.1| (Y12590) translation initiation factor eIF4... 283 3e-75
prf||1912301A initiation factor eIF-4A [Drosophila melanoga... 282 3e-75
pir||JS0039 translation initiation factor eIF-4A - mouse >g... 282 3e-75
pir||S13269 translation initiation factor eIF-4A.I - rabbit... 282 3e-75
emb|CAA26842.1| (X03039) put. eIF-4A (aa 1-390) [Mus muscul... 282 3e-75
ref|NP_001407.1| eukaryotic translation initiation factor 4... 282 3e-75
sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I (EIF... 282 3e-75
gb|AAF54221.1| (AE003678) CG7483 gene product [Drosophila m... 282 4e-75
emb|CAA09195.1| (AJ010456) RNA helicase [Arabidopsis thaliana] 280 2e-74
gb|AAB36962.1| (U78759) IfdA [Dictyostelium discoideum] 279 3e-74
emb|CAA26843.1| (X03039) put. altern. eIF-4A (aa 1-370) [Mu... 278 7e-74
emb|CAA73168.1| (Y12591) translation initiation factor eIF4... 278 9e-74
sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-15 (EI... 277 1e-73
emb|CAB88547.1| (AL353819) probable translation initiation ... 277 1e-73
pir||S52020 translation initiation factor eIF-4A.15 - commo... 277 2e-73
sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-2 (EIF... 276 3e-73
sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A-3 (EIF... 276 3e-73
ref|NP_038534.1| eukaryotic translation initiation factor 4... 276 3e-73
Alignments
>gb|AAF52881.1| (AE003628) me31B gene product [Drosophila melanogaster]
Length = 458
Score = 652 bits (1665), Expect = 0.0
Identities = 314/411 (76%), Positives = 359/411 (86%)
Query: 8 QIVPANNGDENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPS 67
QI + D WK+ L LP KD RFKT DVTDT+G EFE+FCL R+LLMGIFEKGWE+PS
Sbjct: 22 QIAGNTSDDMGWKSKLKLPPKDNRFKTTDVTDTRGNEFEEFCLKRELLMGIFEKGWERPS 81
Query: 68 PIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQT 127
PIQEA+I +AL+G+D+LARAKNGTGKTGAYCIPV+E+I P IQA+V+VPTRELALQT
Sbjct: 82 PIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQT 141
Query: 128 SQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCK 187
SQIC+EL+KH+ ++VMVTTGGT L+DDI+R+ V L+IATPGRILDLM+K VA M HC+
Sbjct: 142 SQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCR 201
Query: 188 TLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLM 247
LVLDEADKLLS DFQG+LD +I LPK+ Q++L+SATFP TV +FM+KH+ +PYEINLM
Sbjct: 202 ILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKHLREPYEINLM 261
Query: 248 EELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSC 307
EELTL GVTQYYAFVQE+QKVHCLNTLF KLQINQSIIFCNSTQRVELLAKKITE+GY C
Sbjct: 262 EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCC 321
Query: 308 YYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHR 367
YYIH+KMAQ HRNRVFHDFRQG CRNLVCSDL TRGID+QAVNVVINFDFPR AETYLHR
Sbjct: 322 YYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHR 381
Query: 368 IGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVAD 418
IGRSGRFGHLG+AINLITYEDR L RIE+EL T I+PIPK +DP LYVA+
Sbjct: 382 IGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKPIPKVIDPALYVAN 432
>sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE
gb|AAA28603.1| (M59926) RNA helicase [Drosophila melanogaster]
Length = 459
Score = 645 bits (1646), Expect = 0.0
Identities = 311/411 (75%), Positives = 357/411 (86%)
Query: 8 QIVPANNGDENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPS 67
QI + D WK+ LN + RFKT DVTDT+G EFE+FCL R+LLMGIFEKGWE+PS
Sbjct: 23 QIAGNTSDDMGWKSKLNCRQRTTRFKTTDVTDTRGNEFEEFCLKRELLMGIFEKGWERPS 82
Query: 68 PIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQT 127
PIQEA+I +AL+G+D+LARAKNGTGKTGAYCIPV+E+I P IQA+V+VPTRELALQT
Sbjct: 83 PIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQT 142
Query: 128 SQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCK 187
SQIC+EL+KH+ ++VMVTTGGT L+DDI+R+ V L+IATPGRILDLM+K VA M HC+
Sbjct: 143 SQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCR 202
Query: 188 TLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLM 247
LVLDEADKLLS DFQG+LD +I LPK+ Q++L+SATFP TV +FM+KH+ +PYEINLM
Sbjct: 203 ILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKHLREPYEINLM 262
Query: 248 EELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSC 307
EELTL GVTQYYAFVQE+QKVHCLNTLF KLQINQSIIFCNSTQRVELLAKKITE+GY C
Sbjct: 263 EELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCC 322
Query: 308 YYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHR 367
YYIH+KMAQ HRNRVFHDFRQG CRNLVCSDL TRGID+QAVNVVINFDFPR AETYLHR
Sbjct: 323 YYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHR 382
Query: 368 IGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVAD 418
IGRSGRFGHLG+AINLITYEDR L RIE+EL T I+PIPK +DP LYVA+
Sbjct: 383 IGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKPIPKVIDPALYVAN 433
>sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54
emb|CAA63149.1| (X92421) RNA helicase p54 [Xenopus laevis]
Length = 481
Score = 611 bits (1558), Expect = e-174
Identities = 300/429 (69%), Positives = 357/429 (82%), Gaps = 3/429 (0%)
Query: 2 SGAEQQQIVPAN--NGDENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIF 59
SG++QQ ++ ++WK L LP KD R KT+DVT TKG EFED+CL R+LLMGIF
Sbjct: 52 SGSQQQAQSMSSIIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIF 111
Query: 60 EKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVP 119
E GWEKPSPIQE SI +AL+G+DILARAKNGTGKTGAY IP++E++ IQAMVIVP
Sbjct: 112 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKTGAYLIPLLERLDLKKDCIQAMVIVP 171
Query: 120 TRELALQTSQICVELSKHIQ-LKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEK 178
TRELALQ SQIC+++SKH+ KVM TTGGT+LRDDIMRL+ TVH+VIATPGRILDL++K
Sbjct: 172 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK 231
Query: 179 GVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHM 238
GVAK++H + +VLDEADKLLSQDF I++ +I LPK RQ++LYSATFP +V FM H+
Sbjct: 232 GVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQILLYSATFPLSVQKFMTLHL 291
Query: 239 HKPYEINLMEELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAK 298
KPYEINLMEELTL GVTQYYA+V E+QKVHCLNTLF +LQINQSIIFCNS+QRVELLAK
Sbjct: 292 QKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAK 351
Query: 299 KITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFP 358
KI+++GYSC+YIH+KM Q HRNRVFHDFR G CRNLVC+DL TRGIDIQAVNVVINFDFP
Sbjct: 352 KISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFP 411
Query: 359 RNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVAD 418
+ AETYLHRIGRSGRFGHLG+AINLITY+DR L+ IE++L T I+PIP ++D LYVA+
Sbjct: 412 KLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKNLYVAE 471
Query: 419 QQLVDAADE 427
D+
Sbjct: 472 YHSESGEDK 480
>ref|NP_031867.1| DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 6
sp|P54823|DDX6_MOUSE PROBABLE ATP-DEPENDENT RNA HELICASE P54 (ONCOGENE RCK HOMOLOG)
(DEAD BOX PROTEIN 6)
dbj|BAA09088.1| (D50494) RCK [Mus musculus]
Length = 483
Score = 610 bits (1557), Expect = e-174
Identities = 297/412 (72%), Positives = 349/412 (84%), Gaps = 1/412 (0%)
Query: 17 ENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGV 76
++WK L LP KD R KT+DVT TKG EFED+CL R+LLMGIFE GWEKPSPIQE SI +
Sbjct: 70 DDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI 129
Query: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
AL+G+DILARAKNGTGK+GAY IP++E++ IQAMVIVPTRELALQ SQIC+++SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 137 HIQ-LKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEAD 195
H+ KVM TTGGT+LRDDIMRL+ TVH+VIATPGRILDL++KGVAK++H + +VLDEAD
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 249
Query: 196 KLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGV 255
KLLSQDF I++ +I LPK RQ++LYSATFP +V FM H+ KPYEINLMEELTL GV
Sbjct: 250 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV 309
Query: 256 TQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMA 315
TQYYA+V E+QKVHCLNTLF +LQINQSIIFCNS+QRVELLAKKI+++GYSC+YIH+KM
Sbjct: 310 TQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMR 369
Query: 316 QNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFG 375
Q HRNRVFHDFR G CRNLVC+DL TRGIDIQAVNVVINFDFP+ AETYLHRIGRSGRFG
Sbjct: 370 QEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Query: 376 HLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVADQQLVDAADE 427
HLG+AINLITY+DR L+ IE++L T I+PIP +D LYVA+ A DE
Sbjct: 430 HLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDE 481
>pir||S22651 probable RNA helicase (EC 3.6.1.-) RCK - human
Length = 483
Score = 609 bits (1553), Expect = e-173
Identities = 296/412 (71%), Positives = 348/412 (83%), Gaps = 1/412 (0%)
Query: 17 ENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGV 76
++WK L LP KD R KT+DVT TKG EFED+CL R+LLMGIFE GWEKPSPIQE SI +
Sbjct: 70 DDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI 129
Query: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
AL+G+DILARAKNGTGK+GAY IP++E++ IQAMVIVPTRELALQ SQIC+++SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 137 HIQ-LKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEAD 195
H+ KVM TTGGT+LRDDIMRL+ TVH+VIATPGRILDL++KGVAK++H + +VLDEAD
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 249
Query: 196 KLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGV 255
KLLSQDF I++ +I LPK RQ++LYSATFP +V FM H+ KPYEINLMEELTL GV
Sbjct: 250 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV 309
Query: 256 TQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMA 315
TQYYA+V E+QKVHCLNTLF +LQINQSIIFCNS+QRVELLAKKI+++GYSC+YIH+KM
Sbjct: 310 TQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMR 369
Query: 316 QNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFG 375
Q HRNRVFHDFR G CRNLVC+DL TRGIDIQAVNVVINFDFP+ AETYLHRIGRSGRFG
Sbjct: 370 QEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Query: 376 HLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVADQQLVDAADE 427
HLG+AINLITY+DR L+ IE++L T I+PIP +D LYVA+ DE
Sbjct: 430 HLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDE 481
>sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE P54 (ONCOGENE RCK) (DEAD BOX
PROTEIN 6)
Length = 483
Score = 609 bits (1553), Expect = e-173
Identities = 296/412 (71%), Positives = 348/412 (83%), Gaps = 1/412 (0%)
Query: 17 ENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGV 76
++WK L LP KD R KT+DVT TKG EFED+CL R+LLMGIFE GWEKPSPIQE SI +
Sbjct: 70 DDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI 129
Query: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
AL+G+DILARAKNGTGK+GAY IP++E++ IQAMVIVPTRELALQ SQIC+++SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 137 HIQ-LKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEAD 195
H+ KVM TTGGT+LRDDIMRL+ TVH+VIATPGRILDL++KGVAK++H + +VLDEAD
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 249
Query: 196 KLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGV 255
KLLSQDF I++ +I LPK RQ++LYSATFP +V FM H+ KPYEINLMEELTL GV
Sbjct: 250 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEINLMEELTLKGV 309
Query: 256 TQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMA 315
TQYYA+V E+QKVHCLNTLF +LQINQSIIFCNS+QRVELLAKKI+++GYSC+YIH+KM
Sbjct: 310 TQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMR 369
Query: 316 QNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFG 375
Q HRNRVFHDFR G CRNLVC+DL TRGIDIQAVNVVINFDFP+ AETYLHRIGRSGRFG
Sbjct: 370 QEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Query: 376 HLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVADQQLVDAADE 427
HLG+AINLITY+DR L+ IE++L T I+PIP +D LYVA+ DE
Sbjct: 430 HLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDE 481
>ref|NP_004388.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 6 (RNA helicase, 54kD)
pir||I52691 RCK - human
dbj|BAA04482.1| (D17532) RCK [Homo sapiens]
Length = 472
Score = 609 bits (1553), Expect = e-173
Identities = 296/412 (71%), Positives = 348/412 (83%), Gaps = 1/412 (0%)
Query: 17 ENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGV 76
++WK L LP KD R KT+DVT TKG EFED+CL R+LLMGIFE GWEKPSPIQE SI +
Sbjct: 59 DDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI 118
Query: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
AL+G+DILARAKNGTGK+GAY IP++E++ IQAMVIVPTRELALQ SQIC+++SK
Sbjct: 119 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 178
Query: 137 HIQ-LKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEAD 195
H+ KVM TTGGT+LRDDIMRL+ TVH+VIATPGRILDL++KGVAK++H + +VLDEAD
Sbjct: 179 HMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 238
Query: 196 KLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGV 255
KLLSQDF I++ +I LPK RQ++LYSATFP +V FM H+ KPYEINLMEELTL GV
Sbjct: 239 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV 298
Query: 256 TQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMA 315
TQYYA+V E+QKVHCLNTLF +LQINQSIIFCNS+QRVELLAKKI+++GYSC+YIH+KM
Sbjct: 299 TQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMR 358
Query: 316 QNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFG 375
Q HRNRVFHDFR G CRNLVC+DL TRGIDIQAVNVVINFDFP+ AETYLHRIGRSGRFG
Sbjct: 359 QEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 418
Query: 376 HLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVADQQLVDAADE 427
HLG+AINLITY+DR L+ IE++L T I+PIP +D LYVA+ DE
Sbjct: 419 HLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDE 470
>dbj|BAA77391.1| (AB013609) DEAD box protein [Cavia porcellus]
Length = 472
Score = 608 bits (1551), Expect = e-173
Identities = 296/412 (71%), Positives = 347/412 (83%), Gaps = 1/412 (0%)
Query: 17 ENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGV 76
++WK L LP KD R KT+DVT TKG EFED+CL R+LLMGIFE GWEKPSPIQE SI +
Sbjct: 59 DDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI 118
Query: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
ALTG+DILARAKNGTGK+GAY IP++E++ IQAMVIVPTRELALQ SQIC+++SK
Sbjct: 119 ALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 178
Query: 137 HIQ-LKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEAD 195
H+ KVM TTGGT+LRDDIMRL+ TVH+VIATPGRILDL++KGVAK++H + +VLDEAD
Sbjct: 179 HMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 238
Query: 196 KLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGV 255
KLLSQDF I++ +I LPK RQ++LYSATFP +V FM H+ KPYEINLMEELTL GV
Sbjct: 239 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV 298
Query: 256 TQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMA 315
TQYYA+V E+QKVHCLNTLF +LQ NQSIIFCNS+QRVELLAKKI+++GYSC+YIH+KM
Sbjct: 299 TQYYAYVTERQKVHCLNTLFPRLQTNQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMR 358
Query: 316 QNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFG 375
Q HRNRVFHDFR G CRNLVC+DL TRGIDIQAVNVVINFDFP+ AETYLHRIGRSGRFG
Sbjct: 359 QEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 418
Query: 376 HLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVADQQLVDAADE 427
HLG+AINLITY+DR L+ IE++L T I+PIP +D LYVA+ DE
Sbjct: 419 HLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDE 470
>pir||A39157 probable RNA helicase (EC 3.6.1.-) - fruit fly (Drosophila
melanogaster) (fragment)
Length = 369
Score = 604 bits (1541), Expect = e-172
Identities = 290/369 (78%), Positives = 330/369 (88%)
Query: 48 FCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEKIQP 107
FCL R+LLMGIFEKGWE+PSPIQEA+I +AL+G+D+LARAKNGTGKTGAYCIPV+E+I P
Sbjct: 1 FCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDP 60
Query: 108 ALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIA 167
IQA+V+VPTRELALQTSQIC+EL+KH+ ++VMVTTGGT L+DDI+R+ V L+IA
Sbjct: 61 TKDYIQALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIA 120
Query: 168 TPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFP 227
TPGRILDLM+K VA M HC+ LVLDEADKLLS DFQG+LD +I LPK+ Q++L+SATFP
Sbjct: 121 TPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFP 180
Query: 228 NTVTSFMQKHMHKPYEINLMEELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFC 287
TV +FM+KH+ +PYEINLMEELTL GVTQYYAFVQE+QKVHCLNTLF KLQINQSIIFC
Sbjct: 181 LTVKNFMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFC 240
Query: 288 NSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQ 347
NSTQRVELLAKKITE+GY CYYIH+KMAQ HRNRVFHDFRQG CRNLVCSDL TRGID+Q
Sbjct: 241 NSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQ 300
Query: 348 AVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIP 407
AVNVVINFDFPR AETYLHRIGRSGRFGHLG+AINLITYEDR L RIE+EL T I+PIP
Sbjct: 301 AVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKPIP 360
Query: 408 KTVDPKLYV 416
K +DP LYV
Sbjct: 361 KVIDPALYV 369
>gb|AAB94769.1| (AF038995) putative RNA helicase RCK [Mus musculus]
Length = 453
Score = 602 bits (1535), Expect = e-171
Identities = 291/403 (72%), Positives = 344/403 (85%), Gaps = 1/403 (0%)
Query: 17 ENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGV 76
++WK L LP KD R KT+DVT TKG EFED+CL R+LLMGIFE GWEKPSPIQE SI +
Sbjct: 45 DDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPI 104
Query: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
AL+G+DILARAKNGTGK+GAY IP++E++ IQAMVIVPTRELALQ SQIC+++SK
Sbjct: 105 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 164
Query: 137 HIQ-LKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEAD 195
H+ KVM TTG T+LRDDIMRL+ TVH+VIATPGRILDL++KGVAK++H + +VLDEAD
Sbjct: 165 HMGGAKVMATTGPTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 224
Query: 196 KLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGV 255
KLLSQDF I++ +I LPK RQ++LYSATFP +V FM H+ KPYEINLMEELTL GV
Sbjct: 225 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV 284
Query: 256 TQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMA 315
TQYYA+V E+QKVHCLNTLF +LQINQSIIFCNS+QRVELLAKKI+++GYSC+YIH+KM
Sbjct: 285 TQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMR 344
Query: 316 QNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFG 375
Q HRNRVFHDF G CRNLVC+DL TRGIDIQAVNVVINFDFP+ AETYLHR+GRSGRFG
Sbjct: 345 QEHRNRVFHDFENGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRVGRSGRFG 404
Query: 376 HLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLYVAD 418
HLG+AINLITY+DR L+ IE++L T I+PIP +D LYVA+
Sbjct: 405 HLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAE 447
Database: nr
Posted date: Jul 9, 2000 11:06 PM
Number of letters in database: 162,524,432
Number of sequences in database: 517,904
Lambda K H
0.322 0.138 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131699510
Number of Sequences: 517904
Number of extensions: 5355204
Number of successful extensions: 13925
Number of sequences better than 10.0: 753
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 11962
Number of HSP's gapped (non-prelim): 898
length of query: 430
length of database: 162,524,432
effective HSP length: 56
effective length of query: 374
effective length of database: 133,521,808
effective search space: 49937156192
effective search space used: 49937156192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 72 (32.5 bits)
