Score E
Sequences producing significant alignments: (bits) Value
pir||T20269 hypothetical protein C56A3.8 - Caenorhabditis e... 786 0.0
gb|AAF52010.1| (AE003602) CG2929 gene product [Drosophila m... 257 1e-67
ref|NP_060793.1| hypothetical protein FLJ11105 >gi|7023561|... 241 8e-63
pir||T39102 hypothetical protein SPAC824.01 - fission yeast... 175 7e-43
ref|NP_012435.1| Yjl100wp >gi|1176483|sp|P42951|YJK0_YEAST ... 152 6e-36
emb|CAB89254.1| (AL353952) hypothetical protein [Homo sapiens] 115 1e-24
pir||T25843 hypothetical protein M03F4.8 - Caenorhabditis e... 77 2e-13
gb|AAD24822.1|AC007196_8 (AC007196) unknown protein [Arabid... 68 2e-10
gb|AAD20161.1| (AC006418) putative ubiquitin [Arabidopsis t... 68 2e-10
emb|CAA15608.2| (AL008970) hypothetical protein, PFC0475c [... 66 5e-10
pir||T18464 hypothetical protein C0480c - Plasmodium falcip... 66 5e-10
dbj|BAA96601.1| (AP002481) Similar to Arabidopsis thaliana ... 66 8e-10
pir||T00749 hypothetical protein T20B5.5 - Arabidopsis thal... 62 7e-09
gb|AAF81291.1|AC027656_8 (AC027656) Strong similarity to an... 62 9e-09
emb|CAB88063.1| (AL163972) putative protein [Arabidopsis th... 59 6e-08
gb|AAF19692.1|AC009519_26 (AC009519) F1N19.4 [Arabidopsis t... 53 6e-06
pir||T05827 hypothetical protein T5K18.220 - Arabidopsis th... 35 1.5
pir||T30000 hypothetical protein ZC8.6 - Caenorhabditis ele... 33 4.4
pir||T20078 hypothetical protein C49F8.1 - Caenorhabditis e... 33 5.7
pir||T16028 hypothetical protein F10D7.5 - Caenorhabditis e... 33 5.7
pir||A72777 hypothetical protein APE0203 - Aeropyrum pernix... 32 7.5
gb|AAF20175.1|AF174488_1 (AF174488) ataxia telangiectasia m... 32 9.8
gb|AAD23629.1|AC007113_2 (AC007113) putative villin [Arabid... 32 9.8
ref|NP_013888.1| involved in respiration and plasmid mainte... 32 9.8
Alignments
>pir||T20269 hypothetical protein C56A3.8 - Caenorhabditis elegans
emb|CAB01138.1| (Z77655) cDNA EST EMBL:D65659 comes from this gene [Caenorhabditis
elegans]
Length = 380
Score = 786 bits (2007), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MSSLEHRKKVDDEFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKPKDE 60
MSSLEHRKKVDDEFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKPKDE
Sbjct: 1 MSSLEHRKKVDDEFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKPKDE 60
Query: 61 EPFASLNPKWPKFFQRMLCFCCFGRACLIPNTGYLSEAAASIVSEMLQLDVVPTTRIVKL 120
EPFASLNPKWPKFFQRMLCFCCFGRACLIPNTGYLSEAAASIVSEMLQLDVVPTTRIVKL
Sbjct: 61 EPFASLNPKWPKFFQRMLCFCCFGRACLIPNTGYLSEAAASIVSEMLQLDVVPTTRIVKL 120
Query: 121 ASPSFFYSRFFGHYDVRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQ 180
ASPSFFYSRFFGHYDVRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQ
Sbjct: 121 ASPSFFYSRFFGHYDVRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQ 180
Query: 181 KMCIVDYVIRNTDRHMDNLLVRHVPGEEINLAAIDNGLAFPVRHPECTSRFRSFPFRWSN 240
KMCIVDYVIRNTDRHMDNLLVRHVPGEEINLAAIDNGLAFPVRHPECTSRFRSFPFRWSN
Sbjct: 181 KMCIVDYVIRNTDRHMDNLLVRHVPGEEINLAAIDNGLAFPVRHPECTSRFRSFPFRWSN 240
Query: 241 LPWAQGEFDPVLRRHVLSLLTPQFVHRLCVDLKKLFRHGIASSNYMLVNSQLRVVRGQIW 300
LPWAQGEFDPVLRRHVLSLLTPQFVHRLCVDLKKLFRHGIASSNYMLVNSQLRVVRGQIW
Sbjct: 241 LPWAQGEFDPVLRRHVLSLLTPQFVHRLCVDLKKLFRHGIASSNYMLVNSQLRVVRGQIW 300
Query: 301 NLRQAILANESPGEMACRDPIIVSRSSDIVMSNPPPPRGMIGLLSSHLATPNNNSSDVTM 360
NLRQAILANESPGEMACRDPIIVSRSSDIVMSNPPPPRGMIGLLSSHLATPNNNSSDVTM
Sbjct: 301 NLRQAILANESPGEMACRDPIIVSRSSDIVMSNPPPPRGMIGLLSSHLATPNNNSSDVTM 360
Query: 361 KTAIEHEKENSTVPENLITL 380
KTAIEHEKENSTVPENLITL
Sbjct: 361 KTAIEHEKENSTVPENLITL 380
>gb|AAF52010.1| (AE003602) CG2929 gene product [Drosophila melanogaster]
Length = 672
Score = 257 bits (650), Expect = 1e-67
Identities = 138/320 (43%), Positives = 192/320 (59%), Gaps = 7/320 (2%)
Query: 7 RKKVDDEFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKPKDEEPFASL 66
R D F + KA+ AI G+ P I +GSSGSYFV + + VFKPKDEEP+ L
Sbjct: 359 RNLYDPLFSEIVAKAEGAIENGVLPERIYQGSSGSYFVKDASHQCLAVFKPKDEEPYGRL 418
Query: 67 NPKWPKFFQRMLCFCCFGRACLIPNTGYLSEAAASIVSEMLQLDVVPTTRIVKLASPSFF 126
NPKW K+ ++ C CCFGRACLIPN GYLSE+ AS+V L L+VVP TR+V+L + SF
Sbjct: 419 NPKWTKWMHKLCCPCCFGRACLIPNQGYLSESGASLVDRKLNLNVVPKTRVVRLVAESFN 478
Query: 127 YSRFFGHYDVRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQKMCIVD 186
Y+R K GSFQL+V GY+ + R ++ L FQL F+++ ++D
Sbjct: 479 YARIDRQKAKLKKTGSFQLFVEGYKDADYWLRR--FESEPLPPSVAKSFQLQFERLVVLD 536
Query: 187 YVIRNTDRHMDNLLVRHVPGEEINLAAIDNGLAFPVRHPECTSRFRSFPFRWSNLPWAQG 246
Y+IRNTDR DN L+++V I +AAIDNGLAFP +HP+ +R++P+ W+ LP A+
Sbjct: 537 YIIRNTDRGNDNWLIKYVNSAFIRIAAIDNGLAFPFKHPD---SWRAYPYHWAWLPQAKI 593
Query: 247 EFDPVLRRHVLSLLTP-QFVHRLCVDLKKLFRHGIASSNYMLVNSQLRVVRGQIWNLRQA 305
F ++ VL L+ FV +C +L LF+ + L Q+ V+RGQI NL QA
Sbjct: 594 PFSEEIKEQVLPQLSDMNFVEEICTELLYLFQQD-RGFDKRLFERQMSVMRGQILNLTQA 652
Query: 306 ILANESPGEMACRDPIIVSR 325
+ +SP ++ +IV R
Sbjct: 653 LRDGKSPVQLVQMPAVIVER 672
>ref|NP_060793.1| hypothetical protein FLJ11105
dbj|BAA92006.1| (AK001967) unnamed protein product [Homo sapiens]
Length = 481
Score = 241 bits (609), Expect = 8e-63
Identities = 145/358 (40%), Positives = 200/358 (55%), Gaps = 50/358 (13%)
Query: 11 DDEFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKPKDEEPFASLNPKW 70
D EF + +A++AI GI P I +GSSGSYFV + +I+GVFKPK EEP+ LNPKW
Sbjct: 103 DPEFADIMLRAEQAIEVGIFPERISQGSSGSYFVKDPKRKIIGVFKPKSEEPYGQLNPKW 162
Query: 71 PKFFQRMLCFCCFGRACLIPNTGYLSEAAASIVSEMLQLDVVPTTRIVKLASPSFFYS-- 128
K+ ++ C CCFGR CLIPN GYLSEA A +V L L +VP T++V L S +F Y+
Sbjct: 163 TKYVHKVCCPCCFGRGCLIPNQGYLSEAGAYLVDNKLHLSIVPKTKVVWLVSETFNYNAI 222
Query: 129 -------------------RFFGHYDVRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSD 169
R F + PK GSFQL+V GY+ ++ D L +
Sbjct: 223 DRAKSRGKKYALEKVPKVGRKFHRIGLPPKIGSFQLFVEGYKEAEYWLRKFEADP--LPE 280
Query: 170 EEGAKFQLLFQKMCIVDYVIRNTDRHMDNLLVRH----------------VPGEE--INL 211
+FQ F+++ I+DY+IRNTDR DN LVR+ + EE I +
Sbjct: 281 NIRKQFQSQFERLVILDYIIRNTDRGNDNWLVRYEKQKCEKEIDHKESKWIDDEEFLIKI 340
Query: 212 AAIDNGLAFPVRHPECTSRFRSFPFRWSNLPWAQGEFDPVLRRHVLSLLTP-QFVHRLCV 270
AAIDNGLAFP +HP+ +R++PF W+ LP A+ F +R +L ++ FV LC
Sbjct: 341 AAIDNGLAFPFKHPD---EWRAYPFHWAWLPQAKVPFSEEIRNLILPYISDMNFVQDLCE 397
Query: 271 DLKKLFR--HGIASSNYMLVNSQLRVVRGQIWNLRQAILANESPGEMACRDPIIVSRS 326
DL +LF+ G + + SQ+ V+RGQI NL QA+ +SP ++ +IV RS
Sbjct: 398 DLYELFKTDKGFDKATF---ESQMSVMRGQILNLTQALRDGKSPFQLVQIPCVIVERS 452
>pir||T39102 hypothetical protein SPAC824.01 - fission yeast
(Schizosaccharomyces pombe) (fragment)
emb|CAB57331.1| (AL121741) hypothetical protein [Schizosaccharomyces pombe]
Length = 499
Score = 175 bits (439), Expect = 7e-43
Identities = 120/376 (31%), Positives = 184/376 (48%), Gaps = 86/376 (22%)
Query: 13 EFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKPKDEEPFASLNPKWPK 72
++ + +EAI G+ P LI +GSSGSYFV + + VFKPKDEEP+ LNPKW K
Sbjct: 5 DYVRLLDATKEAIAHGVFPVLISKGSSGSYFVKNKVQKNIAVFKPKDEEPYGKLNPKWTK 64
Query: 73 FFQRMLCFCCFGRACLIPNTGYLSEAAASIVSEMLQLDVVPTTRIVKLASPSFFYSRF-- 130
+F R L C FGR+CLIPNT YLSEAAA ++ L L +VP T + ++SP+F Y F
Sbjct: 65 WFHRNLFPCFFGRSCLIPNTSYLSEAAACVLDRGLGLYLVPYTSVASISSPTFNYDYFAR 124
Query: 131 ----FGHYDVRPKEGSFQLYVNGYESGNTVFAR--W---------NYDKNLLSDEE---- 171
+ + K GSFQ +++G+ + FA+ W Y +++ S E+
Sbjct: 125 KAFLTRNKPLPEKTGSFQQFLDGFVVASKFFAQHPWPGTRHRETREYTESVASSEDFDIF 184
Query: 172 ------------------GAKFQLLFQKMCIVDYVIRNTDRHMDNLLVR--HVP------ 205
KF+ F+K+ ++DY++RNTDR++DN +++ + P
Sbjct: 185 DPFLAENEIETEFWTEELRLKFRFEFEKLVLLDYLMRNTDRNLDNWMIKICYEPCDNEEY 244
Query: 206 --------------------------------GEEINLAAIDNGLAFPVRHPECTSRFRS 233
G + AIDN LAFP +HP+ +RS
Sbjct: 245 YKSINLLSTNLTPNMSANSVDPAISQTSDFWKGPHFQIGAIDNSLAFPYKHPD---SWRS 301
Query: 234 FPFRWSNLPWA--QGEFDPVLRRHVLSLLTP-QFVHRLCVDLKKLFRHGIASSNYMLVNS 290
FP+ W +LP + F R+ L LT ++ +L DL+ +F + M +
Sbjct: 302 FPYGWLSLPRSLFTQPFTEFTRQLFLHKLTSREWWEKLSDDLRNVFNQDLDFDEKMF-SR 360
Query: 291 QLRVVRGQIWNLRQAI 306
QL +V+GQ +N+ + +
Sbjct: 361 QLSLVKGQAYNIVEVL 376
>ref|NP_012435.1| Yjl100wp
sp|P42951|YJK0_YEAST HYPOTHETICAL 70.2 KD PROTEIN IN GSH1-CHS6 INTERGENIC REGION
pir||S53387 hypothetical protein YJL100w - yeast (Saccharomyces cerevisiae)
emb|CAA59394.1| (X85021) orf 12 [Saccharomyces cerevisiae]
emb|CAA89395.1| (Z49375) ORF YJL100w [Saccharomyces cerevisiae]
Length = 607
Score = 152 bits (380), Expect = 6e-36
Identities = 117/372 (31%), Positives = 173/372 (46%), Gaps = 73/372 (19%)
Query: 34 IPEGSSGSYFVYGL---EGEIVGVFKPKDEEPFASLNPKWPKFFQRMLCFCCFGRACLIP 90
I GSSGSYFVYG E VGVFKPKDEEP+ +PKW K+ R C FGR+CLIP
Sbjct: 167 IQTGSSGSYFVYGTRADESVPVGVFKPKDEEPYGPFSPKWTKWAHRTFFPCLFGRSCLIP 226
Query: 91 NTGYLSEAAASIVSEMLQLDVVPTTRIVKLASPSFFYSR--FFGHYDVRPKE----GSFQ 144
N GY+ E+AAS++ L+ +VP T + S +F+ +R + Y+++ K+ GSFQ
Sbjct: 227 NLGYICESAASLLDRRLETHLVPYTDTASIESFNFYDNRKKWVLGYNLQKKKQKKLGSFQ 286
Query: 145 LYVNGY--------------------------ESGNTVFARWNYDKNLLSDEEGAK---- 174
L++ Y SG + + +NL + E +K
Sbjct: 287 LFLKEYINADEFFHKYPLPGMYSDVKHSFHRKSSGEDINHKPETTRNLTDETEPSKQINS 346
Query: 175 ----------------------FQLLFQKMCIVDYVIRNTDRHMDNLLVRHVPGE----E 208
F+L +K+ I+DY++RNTDR +DN +V+ +
Sbjct: 347 SPISTESEENSKFEWTESSLSQFRLELEKLIILDYIMRNTDRGLDNWMVKLIKLSNNKWR 406
Query: 209 INLAAIDNGLAFPVRHPECTSRFRSFPFRWSNLP--WAQGEFDPVLRRHVLSLLT-PQFV 265
+ LAAIDNGL+FP +HP+ +R +P+ W LP F +R H L +LT +
Sbjct: 407 LKLAAIDNGLSFPWKHPD---EWRLYPYGWLYLPLQLLAKPFSEQMRSHFLPILTSTNWW 463
Query: 266 HRLCVDLKKLFRHGIASSNYMLVNSQLRVVRGQIWNLRQAIL-ANESPGEMACRDPIIVS 324
+ LF N + Q V++GQ +N+ + + + P E+ R V
Sbjct: 464 EESYQEFLALFSRD-QDFNVRMWKKQWAVLKGQAFNVVETLKDPRQGPLELVRRTRCQVI 522
Query: 325 RSSDIVMSNPPP 336
V PPP
Sbjct: 523 DEKMQVPCCPPP 534
>emb|CAB89254.1| (AL353952) hypothetical protein [Homo sapiens]
Length = 258
Score = 115 bits (284), Expect = 1e-24
Identities = 74/212 (34%), Positives = 115/212 (53%), Gaps = 27/212 (12%)
Query: 131 FGHYDVRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQKMCIVDYVIR 190
F + PK GSFQL+V GY+ + R ++ L + + L F+++ ++DY+IR
Sbjct: 27 FNRIGLPPKVGSFQLFVEGYKDADYWLRR--FEAEPLPENTNRQLLLQFERLVVLDYIIR 84
Query: 191 NTDRHMDNLLVRH----------------VPGEEINLAAIDNGLAFPVRHPECTSRFRSF 234
NTDR DN L+++ V I +AAIDNGLAFP++HP+ +R++
Sbjct: 85 NTDRGNDNWLIKYDCPMDSSSSRDTDWVVVKEPVIKVAAIDNGLAFPLKHPD---SWRAY 141
Query: 235 PFRWSNLPWAQGEFDPVLRRHVLSLLT-PQFVHRLCVDLKKLFRH--GIASSNYMLVNSQ 291
PF W+ LP A+ F ++ +L ++ P FV L DL +LF+ G + + Q
Sbjct: 142 PFYWAWLPQAKVPFSQEIKDLILPKISDPNFVKDLEEDLYELFKKDPGFDRGQF---HKQ 198
Query: 292 LRVVRGQIWNLRQAILANESPGEMACRDPIIV 323
+ V+RGQI NL QA+ N+SP + P+IV
Sbjct: 199 IAVMRGQILNLTQALKDNKSPLHLVQMPPVIV 230
>pir||T25843 hypothetical protein M03F4.8 - Caenorhabditis elegans
gb|AAB04579.1| (U64601) Gene probably begins in the next cosmid [Caenorhabditis
elegans]
Length = 365
Score = 77.3 bits (187), Expect = 2e-13
Identities = 42/113 (37%), Positives = 71/113 (62%), Gaps = 5/113 (4%)
Query: 209 INLAAIDNGLAFPVRHPECTSRFRSFPFRWSNLPWAQGEF-DPVLRRHVLSLLTPQFVHR 267
+++AAIDNGLAFP +HP+ +R++PF W+ LP AQ F D ++ + L +V
Sbjct: 162 VDVAAIDNGLAFPFKHPD---EWRAYPFGWALLPQAQIPFSDDIVDLLLPKLDDTNWVRE 218
Query: 268 LCVDLKKLFRHGIASSNYMLVNSQLRVVRGQIWNLRQAILANESPGEMACRDP 320
LC DL+++F++ + + Q+ V+RGQI+NLR+A++ +SP ++ P
Sbjct: 219 LCGDLRRVFKND-KGFDKKIFEKQMSVMRGQIFNLREALMKKKSPYQLIQMPP 270
>gb|AAD24822.1|AC007196_8 (AC007196) unknown protein [Arabidopsis thaliana]
Length = 638
Score = 67.9 bits (163), Expect = 2e-10
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 20/232 (8%)
Query: 23 EAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKPKDEEPFASLNPKWPKFFQRMLCFCC 82
+A+ G++P + G G+Y+ GE V + KP DEEPFA NPK F + L
Sbjct: 149 KAMKMGVEPLPVHSGLGGAYYFRNKRGESVAIVKPTDEEPFAPNNPK--GFVGKALGQPG 206
Query: 83 FGRACLIPNTGYLSEAAASIVSEMLQLDVVPTTRIVKLASPSFFYSRFFGHYDVRPKEGS 142
+ + TG+ A+ + + + VP T +VK+ F + G +P+E
Sbjct: 207 LKSSVRVGETGF--REVAAYLLDYGRFANVPPTALVKITHSVFNVND--GVKGNKPREKK 262
Query: 143 FQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLL-FQKMCIVDYVIRNTDRHMDNLLV 201
+ ++ F ++D SD + F + ++ I+D I NTDRH NLLV
Sbjct: 263 LVSKIASFQK----FVAHDFD---ASDHGTSSFPVTSVHRIGILDIRIFNTDRHGGNLLV 315
Query: 202 RHVPG----EEINLAAIDNGLAFPVRHPECTSRFRSFPFRWSNLPWAQGEFD 249
+ + G ++ L ID+GL P + + +P ++LP++ E D
Sbjct: 316 KKLDGVGMFGQVELIPIDHGLCLPETLEDPYFEWIHWP--QASLPFSDEEVD 365
>gb|AAD20161.1| (AC006418) putative ubiquitin [Arabidopsis thaliana]
Length = 566
Score = 67.9 bits (163), Expect = 2e-10
Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 37/253 (14%)
Query: 17 VFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEG-EIVGVFKPKDEEPFASLNPKWPKFF- 74
+ Q A + + G P EG+ G+YF+ G G + VGVFKP DEEP A NP+
Sbjct: 244 MIQSASDGLKSGNSPVRSSEGTGGAYFMQGPSGNKFVGVFKPIDEEPMAENNPQGLPLSP 303
Query: 75 --QRMLCFCCFGRACLIPNTGYLSE----AAASIVSEMLQLDVVPTTRIVKLASPSFFYS 128
+ + G L Y+ + S+ E + VP T +++ P F +
Sbjct: 304 NGEGLKKGTKVGEGALREVAAYILDHPKSGNKSMFGEEIGFAGVPPTAMIECLHPGFNHP 363
Query: 129 RFFGHYDVRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSD--EEGAKFQLLFQKMCIVD 186
+ ++ K GS Q++ S D LS EE K+ ++D
Sbjct: 364 K-----GIKTKIGSLQMFTENDGSCE--------DMGPLSFPVEE-------VHKISVLD 403
Query: 187 YVIRNTDRHMDNLLVRHVPGEEINLAAIDNGLAFPVRHPECTSRFRSFPFRWSNLPWAQG 246
+ N DRH N+L+ ++ L ID+G P +CT F W P A+
Sbjct: 404 IRLANADRHGGNILMTKDESGKLVLVPIDHGYCLPESFEDCT-------FEWLYWPQARK 456
Query: 247 EFDPVLRRHVLSL 259
+ + ++ SL
Sbjct: 457 PYSAETQEYIRSL 469
>emb|CAA15608.2| (AL008970) hypothetical protein, PFC0475c [Plasmodium falciparum]
Length = 953
Score = 66.3 bits (159), Expect = 5e-10
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 26/205 (12%)
Query: 4 LEHRKKVDDEFQLVFQKAQEAINKGIQPSLIPEGSSGSYFVYGLEGEIVGVFKPKDEEPF 63
++ K + F+ + + + + K I P L +G+ G+Y +Y + +I VFKP DEE F
Sbjct: 128 IDSTKNYPEFFEDILNEIKLSFKKNIAPKLTMDGTGGTYLLYNAKKKICSVFKPLDEEAF 187
Query: 64 ASLNPKW--PKFFQRMLCFCCFGRACLIPNTGYLSEAAASIVSEML-QLDVVPTTRIVKL 120
A NP+ K +Q RA ++ G E AA ++ VP T +V+
Sbjct: 188 APFNPRGYEGKMYQEGF------RAGVLSGEGASREIAAYLLDNCYNNFSNVPCTIMVEA 241
Query: 121 ASPSFFYSRFFGHYD----VRPKEGSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQ 176
+P F + D ++ K GS Q +++ ES NYD S +
Sbjct: 242 CNPHFNNKSKLKYVDKETNLKWKCGSLQEFIDSRESVG------NYDYKQFSIRD----- 290
Query: 177 LLFQKMCIVDYVIRNTDRHMDNLLV 201
K+ I+D + N DR+ N+LV
Sbjct: 291 --IHKIAILDIRVMNLDRNDGNILV 313
Database: nr
Posted date: Jul 9, 2000 11:06 PM
Number of letters in database: 162,524,432
Number of sequences in database: 517,904
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129816405
Number of Sequences: 517904
Number of extensions: 5676184
Number of successful extensions: 11464
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11411
Number of HSP's gapped (non-prelim): 30
length of query: 380
length of database: 162,524,432
effective HSP length: 53
effective length of query: 327
effective length of database: 135,075,520
effective search space: 44169695040
effective search space used: 44169695040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 71 (32.1 bits)
