BLASTP 2.0.14 [Jun-29-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

RID: 963285603-15201-26307

Query= F35G12.10 CE00968   ATP synthase B chain (CAMBRIDGE)
TR:Q20053 protein_id:CAA86329.1
         (301 letters)


Database: nr
           517,904 sequences; 162,524,432 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs


Taxonomy reports



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T21803  hypothetical protein F35G12.10 - Caenorhabditis...   610  e-174
pir||T15960  hypothetical protein F02E8.1 - Caenorhabditis e...   447  e-125
gb|AAF50212.1|  (AE003551) ATPsyn-b gene product [Drosophila...    84  2e-15
sp|P19511|ATPF_RAT  ATP SYNTHASE B CHAIN, MITOCHONDRIAL PREC...    74  2e-12
sp|P13619|ATPF_BOVIN  ATP SYNTHASE B CHAIN, MITOCHONDRIAL >g...    69  7e-11
gb|AAF31360.1|  (AF187862) ATP synthase subunit B [Xenopus l...    64  2e-09
ref|NP_001679.1|  ATP synthase, H+ transporting, mitochondri...    59  6e-08
sp|Q94516|ATPF_DROME  ATP SYNTHASE B CHAIN, MITOCHONDRIAL (F...    58  1e-07
gb|AAB01786.1|  (U43192) myosin II heavy chain [Naegleria fo...    37  0.28
pir||S55890  plasma protein receptor MAG precursor - Strepto...    36  0.49
pir||T14867  interaptin - slime mold (Dictyostelium discoide...    36  0.49
dbj|BAA07194.1|  (D37976) sodium channel alpha subunit [Fugu...    36  0.64
sp|P97434|RIP3_MOUSE  P116 RHO-INTERACTING PROTEIN (P116RIP)...    36  0.64
emb|CAB55772.1|  (AJ249115) microtubule associated protein [...    35  0.84
gb|AAD32447.1|AF067163_1  (AF067163) bamacan homolog [Homo s...    35  0.84
gb|AAF55269.1|  (AE003711) msps gene product [Drosophila mel...    35  0.84
ref|NP_005436.1|  human chromosome-associated polypeptide (b...    35  0.84
gb|AAD27754.1|AF047601_1  (AF047601) SMCD [Mus musculus] >gi...    35  0.84
ref|NP_031816.1|  chondroitin sulfate proteoglycan 6 >gi|256...    35  0.84
gb|AAD13142.1|  (AF072713) SMC3 protein [Bos taurus]               35  0.84
dbj|BAA34955.1|  (AB015485) myosin heavy chain [Dugesia japo...    35  1.1
gb|AAF07179.1|AF192757_1  (AF192757) ALG-2 interacting prote...    35  1.1
gb|AAF47766.1|  (AE003477) kst gene product [Drosophila mela...    35  1.1
dbj|BAA74887.1|  (AB020671) KIAA0864 protein [Homo sapiens]        35  1.1
gb|AAA21249.2|  (U07629) beta-heavy-spectrin [Drosophila mel...    35  1.1
pir||T00379  KIAA0640 protein - human (fragment) >gi|3327094...    34  1.9
ref|NP_060208.1|  hypothetical protein FLJ20276 >gi|7020259|...    34  1.9
gb|AAF24486.1|AF210818_1  (AF210818) SWAP-70 [Homo sapiens]        34  1.9
gb|AAB96342.1|  (U82626) basement membrane-associated chondr...    34  1.9
gb|AAF61403.1|AF134894_1  (AF134894) SWAP-70 homolog [Homo s...    34  1.9
gb|AAF55677.1|  (AE003726) CG7344 gene product [Drosophila m...    34  1.9
gb|AAC66528.1|  (AE001125) acriflavine resistance protein (a...    34  2.5
emb|CAB87206.1|  (AL163640) ubiquitin fusion degradation pro...    34  2.5
pir||D70117  acriflavine resistance protein (acrB) homolog -...    34  2.5
pir||E71606  hypothetical protein PFB0765w - malaria parasit...    34  2.5
dbj|BAA87095.1|  (AB027791) Ubiquitin fusion degradation pro...    34  2.5
dbj|BAA92613.1|  (AB037796) KIAA1375 protein [Homo sapiens]        33  3.2
dbj|BAA92092.1|  (AK002122) unnamed protein product [Homo sa...    33  3.2
ref|NP_035182.1|  programmed cell death 6 interacting protei...    33  3.2
gb|AAF09048.1|AC011717_15  (AC011717) unknown protein [Arabi...    33  3.2
ref|NP_037506.1|  programmed cell death 6-interacting protei...    33  3.2
sp|P08799|MYS2_DICDI  MYOSIN II HEAVY CHAIN, NON MUSCLE >gi|...    33  4.2
sp|P21904|ATPF_PROMO  ATP SYNTHASE B CHAIN, SODIUM ION SPECI...    33  4.2
emb|CAB71087.1|  (AL132962) putative protein [Arabidopsis th...    33  4.2
emb|CAA46896.1|  (X66102) ATPase b subunit [Propionigenium m...    33  4.2
pir||T29095  cardiac muscle factor 1 - chicken >gi|1621107|g...    32  5.5
gb|AAC80427.1|  (AF059906) ubiquitin fusion degradation prot...    32  5.5
sp|P02567|MYSD_CAEEL  MYOSIN HEAVY CHAIN D (MHC D) >gi|47649...    32  5.5
pir||T21193  hypothetical protein R06C7.10 - Caenorhabditis ...    32  5.5
gb|AAD26813.1|AF119955_1  (AF119955) ALG-2 interacting prote...    32  7.3

Alignments
>pir||T21803 hypothetical protein F35G12.10 - Caenorhabditis elegans
 emb|CAA86329.1| (Z46242) similar to ATP synthase B chain~cDNA EST EMBL:T00580 comes
           from this gene~cDNA EST EMBL:T01889 comes from this
           gene~cDNA EST yk459d8.5 comes from this gene~cDNA EST
           yk519f1.3 comes from this gene~cDNA EST yk645d12.3 comes
           from this gene [Caeno>
          Length = 301

 Score =  610 bits (1557), Expect = e-174
 Identities = 301/301 (100%), Positives = 301/301 (100%)

Query: 1   MSLSRLSSPQTFSRVFIVARGAATGHAVAPSSDNSIGYFEKIAYRFKGIPLPTETEAPKS 60
           MSLSRLSSPQTFSRVFIVARGAATGHAVAPSSDNSIGYFEKIAYRFKGIPLPTETEAPKS
Sbjct: 1   MSLSRLSSPQTFSRVFIVARGAATGHAVAPSSDNSIGYFEKIAYRFKGIPLPTETEAPKS 60

Query: 61  MFDACNKEWSAPELLPSVPKDFKEHPDRDLTNYPYPSRPMYPPKTRLLMMPDSWFTAFQK 120
           MFDACNKEWSAPELLPSVPKDFKEHPDRDLTNYPYPSRPMYPPKTRLLMMPDSWFTAFQK
Sbjct: 61  MFDACNKEWSAPELLPSVPKDFKEHPDRDLTNYPYPSRPMYPPKTRLLMMPDSWFTAFQK 120

Query: 121 VTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLVSRTAGYKIDAGLYKDYQ 180
           VTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLVSRTAGYKIDAGLYKDYQ
Sbjct: 121 VTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLVSRTAGYKIDAGLYKDYQ 180

Query: 181 ERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAALKEGMPTSLKDSMQLQLEAAYRKNVQT 240
           ERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAALKEGMPTSLKDSMQLQLEAAYRKNVQT
Sbjct: 181 ERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAALKEGMPTSLKDSMQLQLEAAYRKNVQT 240

Query: 241 ISNEIKRRIEYLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKGIA 300
           ISNEIKRRIEYLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKGIA
Sbjct: 241 ISNEIKRRIEYLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKGIA 300

Query: 301 V 301
           V
Sbjct: 301 V 301



>pir||T15960 hypothetical protein F02E8.1 - Caenorhabditis elegans
 gb|AAA96210.1| (U53340) coded for by C. elegans cDNA cm01d11; coded for by C.
           elegans cDNA yk58a12.5; coded for by C. elegans cDNA
           yk91e6.5; coded for by C. elegans cDNA yk121c2.5; coded
           for by C. elegans cDNA yk96h6.5; coded for by C. elegans
           cDNA yk91e6.3; coded fo>
          Length = 305

 Score =  447 bits (1137), Expect = e-125
 Identities = 217/305 (71%), Positives = 255/305 (83%), Gaps = 6/305 (1%)

Query: 1   MSLSRLSSPQTFSRVFIV----ARGAATGHAVAPSSDNSIGYFEKIAYRFKGIPLPTETE 56
           MSLSR       +RV I+    A  A+T  A A  +D++  +F+K+A+RF+G+PL  E  
Sbjct: 1   MSLSRCLPLGQNARVIIIPARLAHAASTQAAAA--TDDAPNFFQKLAHRFQGVPLKGEAH 58

Query: 57  APKSMFDACNKEWSAPELLPSVPKDFKEHPDRDLTNYPYPSRPMYPPKTRLLMMPDSWFT 116
           APKSMF+ CNKEWSAPE LP++PKDFKEHPDRDL NYPYP+RPMYPPK+RLLMMPDSWFT
Sbjct: 59  APKSMFEDCNKEWSAPEPLPAIPKDFKEHPDRDLVNYPYPARPMYPPKSRLLMMPDSWFT 118

Query: 117 AFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLVSRTAGYKIDAGLY 176
            FQKVTG SGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLV+RTAGYKID GLY
Sbjct: 119 PFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLVTRTAGYKIDQGLY 178

Query: 177 KDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAALKEGMPTSLKDSMQLQLEAAYRK 236
             YQERV FFKGLIQEDLKEAV+F+KTSA QT S  ++KE  PT+LK+SM LQLEA YRK
Sbjct: 179 NGYQERVNFFKGLIQEDLKEAVEFKKTSAKQTESLNSIKESYPTALKESMALQLEATYRK 238

Query: 237 NVQTISNEIKRRIEYLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQL 296
           NVQ+++ E+KRRI+YLKETEE+KAR ER+QLLKLIN  V+K+ S + F++K+LQNAIQQL
Sbjct: 239 NVQSVATELKRRIDYLKETEESKARVEREQLLKLINSEVDKEFSDRSFKDKYLQNAIQQL 298

Query: 297 KGIAV 301
           KG+ V
Sbjct: 299 KGLNV 303



>gb|AAF50212.1| (AE003551) ATPsyn-b gene product [Drosophila melanogaster]
          Length = 243

 Score = 83.9 bits (204), Expect = 2e-15
 Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 8/207 (3%)

Query: 98  RPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWI 157
           RP +P K RL  +P+ WF  F   TG +GPY F  GL  +L +KE++V E + +  +   
Sbjct: 37  RPEHPGKVRLGFLPEEWFQFFYNKTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLG 96

Query: 158 LFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLK---EAVDFRKTSAAQTASFAAL 214
           +  ++  +  G  I      +  +    +K   + +LK   +A++  K    +      L
Sbjct: 97  IMAIIAVKKLGPVIAKWADGEIDKIESEWKEGREAELKVLSDAIEAEKKEQWRADGALLL 156

Query: 215 KEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKLINDS 274
            E    + K+++ LQLEAA+R+    + +E+KRR++Y  E    + R  +  ++  I  +
Sbjct: 157 ME----AKKENIALQLEAAFRERAMNVYSEVKRRLDYQVECRHVERRLSQKHMVNWITTN 212

Query: 275 VEKQVSQKDFQEKFLQNAIQQLKGIAV 301
           V   +S +  +++ L   I  L  +A+
Sbjct: 213 VLASISPQQ-EKETLNKCIADLSALAL 238



>sp|P19511|ATPF_RAT ATP SYNTHASE B CHAIN, MITOCHONDRIAL PRECURSOR
 pir||A35340 H+-transporting ATP synthase (EC 3.6.1.34) chain b precursor,
           mitochondrial - rat
 gb|AAA42187.1| (M35052) F-0-ATPase subunit b precursor [Rattus norvegicus]
          Length = 256

 Score = 74.1 bits (179), Expect = 2e-12
 Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 94  PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
           P P  P Y  K RL ++P+ +F      TG +GPY+   GL  + ++KE++V   +   T
Sbjct: 43  PLPPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST 102

Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKEAVDFRKTSAAQTASFAA 213
           +  +   + V +  G  I   + K  +E++   + + Q  +K+  D      AQ A    
Sbjct: 103 ISVVGLIVYVIKKYGASIGEFIDKLNEEKIAQLEEIKQSSMKQIQDAINREKAQQA-LVQ 161

Query: 214 LKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKLIND 273
            +  +    ++++ L LE  YR+ +     E+K R++Y    ++   R E + ++  +  
Sbjct: 162 KRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHISVQDMMRRKEGEHMINWVEK 221

Query: 274 SVEKQVSQKDFQEKFLQNAIQQLKGIA 300
            V + +S +  +++ +   I  LK +A
Sbjct: 222 HVIQSISAQQ-EKETIAKCIGDLKMLA 247



>sp|P13619|ATPF_BOVIN ATP SYNTHASE B CHAIN, MITOCHONDRIAL
 pir||S00763 H+-transporting ATP synthase (EC 3.6.1.34) chain b - bovine
 emb|CAA29472.1| (X06088) mat. b-subunit (AA 1-214) [Bos taurus]
          Length = 214

 Score = 68.7 bits (165), Expect = 7e-11
 Identities = 41/196 (20%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 94  PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
           P P  P +  K R  ++P+ +F      TG +GPY+   GL  +L++KE++V   +    
Sbjct: 1   PVPPLPEHGGKVRFGLIPEEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITPETFSA 60

Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLK---EAVDFRKTSAAQTAS 210
           +  I F + + +  G  +     K  ++++   + + Q  +K   +A+D  K+  A    
Sbjct: 61  ISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQK 120

Query: 211 FAALKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKL 270
              L +      ++++ + LE  YR+ +  +  E+K R++Y    +    + E++ ++  
Sbjct: 121 RHYLFDVQ----RNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINW 176

Query: 271 INDSVEKQVSQKDFQE 286
           +   V + +S +  +E
Sbjct: 177 VEKRVVQSISAQQEKE 192



>gb|AAF31360.1| (AF187862) ATP synthase subunit B [Xenopus laevis]
          Length = 250

 Score = 64.0 bits (153), Expect = 2e-09
 Identities = 46/210 (21%), Positives = 99/210 (46%), Gaps = 8/210 (3%)

Query: 94  PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
           P P  P    K R  ++P+  F      TG +GPY+   GL  +L++KE++V   +    
Sbjct: 39  PVPPLPEKGGKVRFGLIPEELFQFLYPKTGVTGPYMLGTGLLVYLLSKEIYVINHESFAA 98

Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVG---FFKGLIQEDLKEAVDFRKTSAAQTAS 210
               +  +   +  G  + A   K  +E+V      K    ++L+ A++  K    +   
Sbjct: 99  ASIGICIVYGIKKFGPSVAAFADKLNEEKVAKAQAVKDSAIKNLERAIEEEKKEQWR--- 155

Query: 211 FAALKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKL 270
            A  +  +  + ++++ + LE  YR+ +  + NE+K+R++Y    +  + R E+D ++  
Sbjct: 156 -AEGRHHLFDAKRNNVSVLLEINYRERLLNVFNEVKKRLDYQVALQHLQRRKEQDHMINW 214

Query: 271 INDSVEKQVSQKDFQEKFLQNAIQQLKGIA 300
           +  +V + ++ +  Q++ +   I  LK +A
Sbjct: 215 VEKNVVQSITPQQ-QKESIAKCITDLKLLA 243



>ref|NP_001679.1| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b,
           isoform 1
 sp|P24539|ATPF_HUMAN ATP SYNTHASE B CHAIN, MITOCHONDRIAL PRECURSOR
 pir||JQ1144 H+-transporting ATP synthase (EC 3.6.1.34) chain b precursor,
           mitochondrial - human
 emb|CAA42782.1| (X60221) H+-ATP synthase subunit b [Homo sapiens]
          Length = 256

 Score = 58.9 bits (140), Expect = 6e-08
 Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 18/215 (8%)

Query: 94  PYPSRPMYPPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMT 153
           P P  P Y  K R  ++P+ +F      TG +GPY+   GL  + ++KE++V   +    
Sbjct: 43  PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLVLYALSKEIYVISAETFTA 102

Query: 154 VGWILFYLLVSRTAGYKIDAGLYKDYQERVGFFKGLIQEDLKE--------AVDFRKTSA 205
           +      +L     G K       D+ +++   K    E+ K+        A+D  K+  
Sbjct: 103 LS-----VLGVMVYGIKKYGPFVADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQ 157

Query: 206 AQTASFAALKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERD 265
           A       L +      ++++ + LE  YR+ +  +  E+K R++Y    +    R E++
Sbjct: 158 ALVQKRHYLFDVQ----RNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQE 213

Query: 266 QLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKGIA 300
            ++  +   V + +S +  +++ +   I  LK +A
Sbjct: 214 HMINWVEKHVVQSISTQQ-EKETIAKCIADLKLLA 247



>sp|Q94516|ATPF_DROME ATP SYNTHASE B CHAIN, MITOCHONDRIAL (FO-ATP SYNTHASE SUBUNIT B)
 emb|CAA70164.1| (Y08967) Fo-ATP synthase subunit b [Drosophila melanogaster]
          Length = 184

 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 42/183 (22%), Positives = 85/183 (45%), Gaps = 8/183 (4%)

Query: 122 TGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLVSRTAGYKIDAGLYKDYQE 181
           TG +GPY F  GL  +L +KE++V E + +  +   +  ++  +  G  I      +  +
Sbjct: 2   TGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEIDK 61

Query: 182 RVGFFKGLIQEDLK---EAVDFRKTSAAQTASFAALKEGMPTSLKDSMQLQLEAAYRKNV 238
               +K   + +LK   +A++  K    +      L E      K+++ LQLEAA+R+  
Sbjct: 62  IESEWKEGREAELKVLSDAIEAEKKEQWRADGALLLMEAK----KENIALQLEAAFRERA 117

Query: 239 QTISNEIKRRIEYLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKG 298
             + +E+ R ++Y  E    + R  +  ++  I  +V   +S +  +++ L   I  L  
Sbjct: 118 MNVYSEVNRPLDYQVECRHVERRLSQKHMVNWITTNVLASISPQQ-EKETLNKCIADLSA 176

Query: 299 IAV 301
           +A+
Sbjct: 177 LAL 179



>gb|AAB01786.1| (U43192) myosin II heavy chain [Naegleria fowleri]
          Length = 746

 Score = 36.7 bits (83), Expect = 0.28
 Identities = 27/109 (24%), Positives = 59/109 (53%), Gaps = 2/109 (1%)

Query: 190 IQEDLKEAVDFRKTSAAQTASFAALKEGMPTSLKDSMQ-LQLEAAYRKNVQTISNEIKRR 248
           +Q+DL +    R+ +  Q  +     + + + L D+ Q  Q EAA R+N+++ +N +K  
Sbjct: 330 LQKDLSDHHGDREETEEQLDALRKQLQELTSRLSDANQKTQQEAASRQNLESENNRLKSE 389

Query: 249 IEYLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLK 297
           +  L+E  + + R  + ++ ++ ++S E + S+   Q + LQ A  ++K
Sbjct: 390 VSRLREDLQNENRRLKQEMERVQSES-ENEKSELLTQLQKLQEAYSEVK 437



>pir||S55890 plasma protein receptor MAG precursor - Streptococcus dysgalactiae
 gb|AAA26921.1| (L27798) mag [Streptococcus dysgalactiae]
          Length = 413

 Score = 36.0 bits (81), Expect = 0.49
 Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 2/72 (2%)

Query: 195 KEAVDFRKTSAAQTASFAALKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKE 254
           ++AVD  K  AA  A+F+ LK+    + +D  +L  +     +V  I N+   ++E  K 
Sbjct: 113 RDAVD--KAIAADAAAFSELKDAQLKAYEDLAKLAADTDLDLDVAKIINDYTTKVENAKT 170

Query: 255 TEETKARFERDQ 266
            E+ K  FE  Q
Sbjct: 171 AEDVKKIFEESQ 182




  Database: nr
    Posted date:  Jul 9, 2000 11:06 PM
  Number of letters in database: 162,524,432
  Number of sequences in database:  517,904
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95594840
Number of Sequences: 517904
Number of extensions: 4179236
Number of successful extensions: 12587
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 12541
Number of HSP's gapped (non-prelim): 90
length of query: 301
length of database: 162,524,432
effective HSP length: 56
effective length of query: 245
effective length of database: 133,521,808
effective search space: 32712842960
effective search space used: 32712842960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 70 (31.7 bits)